Alosa sapidissima (American shad): 121724084
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Entry
121724084 CDS
T11137
Symbol
tubgcp6
Name
(RefSeq) gamma-tubulin complex component 6 isoform X1
KO
K16573
gamma-tubulin complex component 6
Organism
asad Alosa sapidissima (American shad)
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
asad03036
]
121724084 (tubgcp6)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
asad04812
]
121724084 (tubgcp6)
Chromosome and associated proteins [BR:
asad03036
]
Eukaryotic type
Centrosome formation proteins
Microtubules and associated factors
gamma-tubulin ring complex
121724084 (tubgcp6)
Cytoskeleton proteins [BR:
asad04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Gamma-tubulin complex components
121724084 (tubgcp6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GCP6_N
GCP_C_terminal
GCP_N_terminal
GCP5-Mod21_C
AAA_23
Motif
Other DBs
NCBI-GeneID:
121724084
NCBI-ProteinID:
XP_041966363
LinkDB
All DBs
Position
11:38036225..38072085
Genome browser
AA seq
1913 aa
AA seq
DB search
MSSCQHIDNSCSSSITDLLGALCDSSLTGVSWKRRALGGISREGVRRALRRRAYGALLSR
LFQESSPKPPSPLASTPPRNKMLMISFDLRVTGCPEDAERLEELLGRLQDGAASGLAELD
SMLELLVQLAGSVPPPPTSFSRDYMRRERPVLRRTPLGGYQSEELQRLEARAWALVCGEE
WSNLGGLCSSVALMDAPPGTGLLALRQSSEVEERFERDTRLSLFGALQHSRTSDLDVKLD
LPPVPSNADVTGLAIRVPPWLDQSEDEGFQSASNLTPDSQSEPSTSPEVDMWEALRCFEP
GRRRCWERIGCPPGQKVAPYLSEGGRVAFDQLYRLWEGEMRLVSSTPSPLLPLPLGAQTP
LVKDVLNVLIGVASTTFPLNKDCVQFDVRPGVCLSGASPESVSRLLGELALYGTHYLRLS
HFSLQSTHKRGLVFQAFTGGLRRYLHYYRACVLSTPPTLSLLTISFLFRKLGRQLRYLSE
LCCVDGESSGVQPAFPVGVKLLSYLYNEAQSNCSNENYPVLLSLLKTSCEPYTRFVSDWV
YSGVFRDVYGEFMIQVKEDYLGHRDKHFWTQGYTLISNNVEDCVPVFLRHIANDVYVCGK
TINLLKICCPQHYICWSELPVPRISVTFSLQEVEEIERDCAIYRGRMERIAKHSAISREE
QTLRTEQARQELIHQVRESTAKTLDSIRGRMVSQRLAEEAKKRERFEELKQQLELEQEWR
SSARRKEKEDDFGFARELRDREKRLQALEEQLEQRARKELIAQYSRLSEEAARREWKAVW
RVQRMRLDEQRAHFLQQDQQSIQGLLEKYPLGQPGPNLEALPRPGLAATQTAQESLGAEP
QAQQIGASGVSLSSAPRPPHASASISGSTTSAAVAGVLVPENKMDGRDFPSDVQANSQHV
EPAPQDIGSDFPAASASAPPPLPSPSPSASADYDFSAPFAPLEQGIHAHVRPRWDAHPAL
AHIRLKEEDATSEAGQEEEEGRRADEQTDTALQAGRPTPGLPGHTAETDGLTAAVPQPQE
ASSLSVSVGTDCETGDRRAQPQVTGGTRQAVLAPSPLPESAPEPSTVAGDIRQGQQSETP
LSRAATAEGSAGPTHGHPSDTHIKVGENISGVTDTRASPSHHGHSSDAHIRVGENVSEVQ
SSLPTPNIHGHASDAHIRVGENVSEVTTTLPSPSIHGHASHGHIKVGENVSEIVAPLPSQ
SVHGHASDANLQVGGFVSEVTPSQPRWSKHGHASDSTLQVGCLVVGAEPALSPLPRSAHG
HSSDSTLGIGCVVGATEVFQPPQPSAHGHSSDSTLTVGCVVSGVQPQLAPLPGSAHGHSS
DSILAVGCVVSGVQPQLAPLPGSAHGHSSDSILAVGCVVSGVQPQLAPLPGSAHGHSSDS
ILAVGCVVLGVQPQLAPLPGSAYGHSSNSTLAVGCVVSGVQPQLAPLPGSAHGHSSDSAL
GMGCVVKGPKPGSALQTDPSLKRDGDAPQPSTDLLTNPDSPYGLLGLPAFLDEGLTAWAQ
GLGLSPGESPEDHYLLSLASQYQVEQYEDTYNLMTAVPDTLLLQQVVRGPYGFPMDPSLH
RATDTTAVRLSEMVSLPVLMKHSVTTPLITHVSLVNKAVVDYFFVELCVERHFEALRHFL
LMEDGEFAQSLSDLLFEKLGSGQTPGELLTPLVLNSILNKALQYSLHGDSALAANFTFAL
RYLPETFHPHAPDSLNCLELRYKVDWPLNIIISDSCMNKYNRLFSFLLQLKHMVWTLRDV
WFQLKRTARVKGVAGSVQFHQLQLYRHEMQHFVKVIQGYLANQILQVSWSEFTTKLGSVS
DLDAIHRTHADYLNRAIFRGLLTEKAAPVMNIIHSIFSLILKFRAQLVSQPWECQQGETV
HPSFIAMQQSYNTFKYYSHFLFTVVSKLVNKGYQPHLEDFLLRINFNDYYKDS
NT seq
5742 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagctgccaacacatcgacaacagctgcagtagcagcatcacggacctgctcggg
gcgctgtgtgacagcagcttgaccggagtgtcatggaaacgacgtgccctgggcggtatt
tctcgggagggggtgcggcgcgctctccgcaggcgggcctatggcgctctgctgtctaga
cttttccaggagagttcacccaaacctcccagccctctggcctccactcctcccaggaac
aaaatgctcatgatttcctttgacctacgggtgactggttgcccggaggatgccgagcga
ctggaggagctgcttgggaggctacaggacggtgctgcctctggcttggctgagttggac
tccatgctggagctcctggtgcagctggctggctcggtgcccccgccgcccacttccttc
agcagggactacatgcggcgtgagcggccagtgctgcgcaggactcctctgggcggctac
cagagcgaggagctccagaggctggaggccagggcctgggcactggtctgcggggaggag
tggagcaatctagggggtctctgcagctcggtggcactgatggacgccccaccggggacc
ggacttctggccttacggcagagctcagaggtggaggagcgctttgagagagacaccagg
ctgtcgctgtttggagccctgcagcactcccgcacctcagacctggacgtcaagctggac
ctgcctcctgtgcccagcaacgcagatgtgaccggcctggctatcagggttcctccatgg
ttggaccagtctgaggacgagggcttccagtcagcttctaacctgacgccagactcccag
tcggagcctagcaccagcccggaggtggacatgtgggaggccttgcgctgctttgagcct
gggaggcgccgctgctgggagcgtataggctgtcctccgggccagaaggtggcgccatac
ctgtccgagggaggcagggtggccttcgaccagctctaccggctgtgggagggggagatg
aggctggtgagctccaccccctcccctctgctgcctctgcctctgggcgctcagactccg
ctagtgaaggatgtcctcaacgtgctgatcggagtggcctccaccacgttccccctcaat
aaggactgtgtgcagtttgacgtgcgccccggagtgtgtctgtcgggggcgtctccggag
agtgtgtcacggctgttgggggagctggcactctacggcacacactacctgcgcctcagc
cacttctctcttcagagcacccacaagcgcggccttgtcttccaggccttcacggggggt
ctgaggcgatacctccactattacagagcctgtgtcctgagcacgccccccacactcagc
ctgctcactatcagcttcctgttccgcaagctcggacgtcagctaaggtacctgtcagag
ctgtgctgtgtggatggagagtccagtggggtccagccagccttccctgtgggagtcaag
ttgctctcgtacctgtacaacgaggcgcagagcaactgcagcaatgagaactaccccgtg
ctgctgtctctgctgaagaccagctgtgagccctacactcgatttgtatcagactgggtg
tacagtggtgttttcagagatgtgtacggggagttcatgatccaggtgaaagaggactac
ctgggccacagagacaagcatttctggactcagggctacactctgatctcaaacaacgtt
gaggactgcgttccagtcttcttgaggcacatcgccaacgacgtgtacgtctgtgggaag
accatcaatctgttgaagatctgctgtcctcagcactacatctgttggtcggagctgccc
gtgcctcgcatctctgtcaccttctcgctccaggaggtggaggagatcgagcgcgactgc
gccatctaccgggggcgcatggagcgcatcgccaagcacagcgccatcagcagggaagag
cagactctacgcacagagcaggcgcggcaggagctcatccatcaggtcagggagtcgacg
gccaagacgctggacagcatccgaggtcggatggtgtcgcagcgcttggcagaggaggcc
aagaagagggaacgctttgaggagctgaagcagcaactggagttggaacaggagtggcgg
agcagcgccaggaggaaggagaaggaagacgacttcggtttcgcccgtgagctgagggac
cgtgagaagagactgcaggccctggaggagcagctggagcagagggccaggaaggagttg
attgcccagtacagccgtctgtcggaggaggcggccaggcgcgagtggaaggccgtgtgg
cgggtgcagaggatgaggctggacgagcagagagcccacttcctccagcaggaccagcag
agcatccagggcctcctagagaaatatcctcttgggcaaccagggccgaacctcgaagcg
cttccaagaccgggactagcagctacgcaaacagctcaggagtccctgggcgccgagcca
caggcgcagcagatcggagccagcggggtgtcgctctcctccgcccctcgtcctccccac
gcgtccgcctccatctcgggctcgaccacttcagcggcggtcgccggcgtgcttgtgccg
gaaaacaagatggacggcagagacttcccttcggacgtgcaggcgaacagccagcacgtg
gagccagcgccacaggatatcggctcggatttcccagcagcctctgcttccgctcctccc
cctcttccttctccttctccctccgcgagtgccgactacgacttcagcgcgcccttcgcc
ccgctggagcagggcatccacgcccacgtccgccctcgctgggacgcccacccggccctc
gcacacatccgcctcaaggaggaggacgccacatctgaggccggccaggaggaggaggag
ggcaggcgggcggacgagcagacagacacagctctgcaggcaggacgaccaaccccagga
ctccccgggcacacggcagagacagatggactgaccgctgctgttcctcagccccaggag
gcctccagtctgagcgtgtcagttgggacggactgtgagacgggggaccgcagagcacag
ccacaggtgactggagggactcggcaggctgtcctagcaccctcgcctttgccagaatcc
gcaccagagcccagtactgtggctggggacattagacaaggtcagcagtctgagacgcct
ttgtctcgggctgctaccgctgagggttctgctggacccacgcatggacatccctcagac
actcacattaaggtcggcgaaaacatttcaggtgtgacggacactcgcgcatcccctagt
catcatggccactcctccgatgcccatataagggtcggggagaatgtgtctgaggtccaa
agttctctccctacaccaaacattcacggacacgcctccgacgcccatataagggtagga
gagaacgtttctgaggtgaccaccactctcccctcccctagcattcacggtcacgcctct
cacggccacatcaaggtgggcgagaacgtgtccgagattgttgccccacttccctcccag
agtgtccatgggcacgcctcggacgccaacctgcaggtgggtggcttcgtgtcggaggtg
accccctcgcaaccccgctggagcaagcacggccacgcctcggactccactcttcaggtg
ggctgcctggtggtcggcgcagagccagctctctccccgctcccccgcagcgcccacggc
cactcctccgactccacactgggcatcggctgcgtggtgggggccactgaagtcttccag
ccccctcagcccagtgcccacggccactcctcggactccaccctcacagtgggctgtgtg
gtgtcgggcgttcagccccaactggcccctctaccgggcagtgcccacggccactcgtcc
gactccatcctggccgtgggctgtgtggtgtcgggcgttcagccccaactggcccctcta
ccgggcagtgcccacggccactcgtccgactccatcctggccgtgggctgtgtggtgtcg
ggcgttcagccccaactggcccctctaccgggcagtgcccacggccactcgtccgactcc
atcctggccgtgggctgtgtggtgttgggcgttcagccccaactggcccctctaccgggc
agtgcttatgggcactcgtccaactccaccctggccgtgggctgtgtggtgtcgggcgtt
cagccccaactggcccctctaccgggcagtgcccacggccactcgtccgactccgctctg
ggaatgggctgtgtggtgaagggccccaagcctggcagcgcactacagacggacccctca
ctcaagagggacggagatgcccctcagccttcaactgacctgctcaccaacccagactct
ccctacgggctccttggcctccctgcctttctggatgaagggctgactgcatgggctcag
ggcctgggcctctcccctggcgaaagccctgaggaccactacctgctgtccctggcctcc
cagtaccaggtggagcagtacgaggacacctacaacctcatgacggcggtcccggacacc
ctgctgttgcagcaggtggtgcgggggccctacggcttccccatggacccctccctccac
agggccaccgacaccacagccgtgcggctcagcgagatggtgtccctaccggtgctgatg
aaacactccgttaccacgcctctcatcactcatgtgtctctggtcaacaaggctgtcgtg
gattacttttttgtggagctgtgtgtggagaggcactttgaggccctgcggcacttcctt
ttgatggaggacggagagttcgcccagtccctcagtgacctgctcttcgagaagctgggg
agtggacagacccctggagagctcctgactcctctggtgcttaactccatcctcaacaaa
gcgctgcagtacagcctgcacggagacagcgccctggcagccaacttcacgttcgccctg
cggtaccttccggaaaccttccacccacacgcccccgactctctcaactgtctggagcta
cgctacaaggttgattggcccttaaacattatcatcagcgacagctgcatgaacaagtac
aaccgcctcttctccttcctgctgcagctcaagcacatggtgtggaccctgcgggacgtc
tggttccagctgaagagaaccgcgcgggtgaaaggtgtggccggctctgtgcagttccat
cagctgcagctctacaggcacgagatgcagcactttgtcaaggtcatccagggctacctg
gccaaccagatcctgcaggtgtcctggagtgagttcactaccaagctgggcagcgtcagc
gaccttgacgccatccaccgcacccacgccgactacctcaacagagccatcttcaggggg
ctgttgacggagaaggctgctccagtcatgaacatcatccacagcatcttcagcctcatc
ctgaagttccgtgcccagctcgtgtcccagccctgggagtgccagcagggggagacagtg
caccccagcttcatcgccatgcagcagtcctacaacaccttcaagtactactcgcacttc
ctcttcacagttgtctccaaattggtcaacaaaggctaccagcctcacctggaggacttc
cttctgcgcatcaacttcaacgactattacaaggactcctga
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integrated database retrieval system
