Alosa sapidissima (American shad): 121724110
Help
Entry
121724110 CDS
T11137
Symbol
roraa
Name
(RefSeq) nuclear receptor ROR-alpha A
KO
K08532
RAR-related orphan receptor alpha
Organism
asad Alosa sapidissima (American shad)
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
asad03000
]
121724110 (roraa)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
asad03310
]
121724110 (roraa)
Transcription factors [BR:
asad03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
121724110 (roraa)
Nuclear receptors [BR:
asad03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
121724110 (roraa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
121724110
NCBI-ProteinID:
XP_041966399
LinkDB
All DBs
Position
11:7864603..7886635
Genome browser
AA seq
540 aa
AA seq
DB search
MTQPSSSLAPPFSGAARSAALALVGLAGEGWRNSRQQPQHRHHNFQRGTPRQGKRASQTA
TATATALQCHLLPGACQCATAAQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSN
AAYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAVKFGRMSKKQRDSLYAEVQKHR
LQQQQREHQQQPGEAEPLTPTYGGLAANGLTELHDDLGGYMDGHTPDGAKPDSAVSSFYL
DIQPSPDQSGLDINGIKPEPICDFTPGSGFFPYCSFTNGESSPTVSMAELEHLAQNISKS
HMETCQYLREELQQMTWQTFLQEEMESYQNKPREVMWQLCAIKITEAIQYVVEFAKRIDG
FMELCQNDQIVLLKAGSLEVVFVRMCRAFDSQNNTVYFDGKYAGPDVFKSLGCDDLISSV
FEFGKNLCSMHLSEDEIALFSAFVLMSADRSWLQEKMKVEKLQQKIQLALQHVLQKNHRE
DGILTKLICKVSTLRALCSRHTEKLTAFKAIYPDIVRAHFPPLYKELFGSDFEQAMPVDG
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
atgacccagcccagcagcagcctggctcccccattttctggggctgccagatctgcagcc
ctggccctggtaggcttagctggagagggctggaggaactcaaggcagcagcctcagcac
cgccaccacaacttccagcgtggcacgccgaggcagggcaagcgagcgagtcagacagcc
acagccacagccacggccctgcagtgccacctgctgcccggggcctgccagtgcgccact
gcagctcaaattgaaattattccttgcaagatctgtggagacaaatcatcaggcatccat
tatggggtgataacatgtgagggctgcaagggtttcttcaggaggagtcagcagagcaat
gcggcgtactcgtgtccccgtcagaagaactgcctgattgaccgtaccagccgtaaccgc
tgccagcactgcaggctacagaaatgcctggcagtgggcatgtcacgggacgcggtgaag
ttcggccgcatgtccaagaagcagcgtgacagcctgtatgcggaggtgcagaagcaccgg
ctgcagcagcagcagcgcgagcaccagcagcagcccggcgaggccgagcccctcacgccc
acctacggcggcctggccgccaacggcctcaccgagctccacgacgacctcggcggctac
atggacggacacaccccggatggcgccaagcccgactcggccgtcagcagcttctacctg
gacatccagccctcgcctgaccagtccggcctggacatcaacggcatcaagcccgagccc
atctgcgacttcacgcccggctccggcttcttcccctactgctcgttcaccaacggcgag
agctcgcccaccgtctccatggcagagctagaacacctggcccagaacatctctaagtcc
cacatggagacatgtcagtacctgagagaggagctccagcaaatgacctggcagaccttc
cttcaggaggagatggagagctaccagaacaagcctcgagaagtcatgtggcagctgtgc
gccatcaagatcacagaggccatccagtacgtggtggagttcgccaagcgcatcgacggc
ttcatggagctgtgtcagaacgaccagatcgtgctgctcaaagcaggctctctggaggta
gtgtttgtccgaatgtgccgtgcctttgactctcagaacaacacagtctatttcgatgga
aagtatgctggtcctgatgtgttcaagtcattaggctgtgacgatttgatcagctctgtc
tttgagtttgggaaaaacttgtgttctatgcacctgtctgaggacgagatcgccctgttc
tctgcgtttgtgttgatgtcagcagaccggtcctggcttcaggagaagatgaaggtggag
aaactacaacaaaagatccagttggccctgcaacatgtcctgcagaagaaccacagagag
gatggcatcctgactaagttgatatgcaaagtgtcgacgctgcgagcgctgtgcagcagg
catacagagaagctgacggctttcaaagcaatatacccagacattgtgcgtgcccacttc
ccccccttatacaaggagctgttcggatcggactttgagcaggccatgcccgtggacggg
tag
DBGET
integrated database retrieval system
