Alosa sapidissima (American shad): 121724372
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Entry
121724372 CDS
T11137
Symbol
polr3b
Name
(RefSeq) DNA-directed RNA polymerase III subunit RPC2
KO
K03021
DNA-directed RNA polymerase III subunit RPC2 [EC:
2.7.7.6
]
Organism
asad Alosa sapidissima (American shad)
Pathway
asad03020
RNA polymerase
asad04623
Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
121724372 (polr3b)
09150 Organismal Systems
09151 Immune system
04623 Cytosolic DNA-sensing pathway
121724372 (polr3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
asad03021
]
121724372 (polr3b)
Enzymes [BR:
asad01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
121724372 (polr3b)
Transcription machinery [BR:
asad03021
]
Eukaryotic type
RNA polymerase III system
RNA polymerase III
Core subunits
121724372 (polr3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
121724372
NCBI-ProteinID:
XP_041966823
LinkDB
All DBs
Position
11:complement(15152024..15175845)
Genome browser
AA seq
1132 aa
AA seq
DB search
MDALQEEFRGMTPQQLAAPVNTVEEKWKLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMK
ANEKITSDADPMWYLKYLNIYVGMPDVEESFNVTRPVSPHECRLREMTYSAPITVDIEYT
RGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPMEFSKLNECPLDPGGYFIVKGQEKVILI
QEQLSKNRIIVEQDRKGAVGASVTSSTHEKKSRTNMIVKQGRFYLKHNTLSEDAPIAIIF
KAMGVESDQEIVQMIGTEEHVMAAFGPSLEECQKAQIFTQTQALKYIGNKVRRQRMWGGP
KKTKMEEARELLASTILTHVPVKEFNFRAKCIYLAVMVRRVILAQGNNKVDDRDYYGNKR
LELAGQLLSLLFEDLFKKFNTELKKIADQIIPKQRAAQFDVVKHMRQDQITNGMVNAIST
GNWSLKRFKMDRQGVTQVLSRLSFISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCP
SDTPEGEACGLVKNLALMTHITTDMEDGPIIKLAFNLGVEDVNLLCGEELSYPSVFLVFL
NGNILGVIRDHSKLVNTFRLMRRAGFINEFVSISTNLTDRCVYISSDGGRLCRPYIIVKN
GQPAVKNKHIEELSQGYRNFEDFLHESLVEYLDVNEENDCSIALYEHMITKTTTHLEIEP
FTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQKPMVK
TKTIELIDFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKR
YTNQTFDKVMGPMLDAETRKPIWRHSILDADGICSPGEKVENKQVLVNKYMPTVTQTPLE
GTAQPGQPQYRDVPITYKGSTDSYIEKVMISSNAEDAFLIKILLRQTRRPEIGDKFSSRH
GQKGVCGLIVPQEDMPFCDTGICPDIIMNPHGYPSRMTVGKLIELLAGKAGVLDGRFHYG
TAFGGSKVKDVCEDLIRYGYNYQGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMH
ARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDAFEVDVCG
QCGLLGYSGWCHYCKSSCHVSSLRIPYACKLLFQELQSMNIVPRLKLARYND
NT seq
3399 nt
NT seq
+upstream
nt +downstream
nt
atggacgctcttcaagaggagttcaggggcatgacccctcagcaactggcggcacctgta
aatactgtggaggaaaaatggaaattgctcccggcgtttttgaaggtcaaagggcttgtg
aagcaacacatagactcattcaattacttcatcaatgtggagataaagaagatcatgaaa
gccaatgaaaagatcaccagtgatgctgacccaatgtggtacctcaaatatctcaatatt
tatgttggcatgccggatgtggaagagagcttcaatgtaacacgaccagtgtctccacat
gagtgtcggctgagagaaatgacgtactctgctcctatcacagtggacattgagtacacc
cgagggagtcagagaatcatccggaatgccctgcctatcggaagaatgcccattatgctg
cggagttccaactgtgttctaacgggaaagacacccatggagttctccaaactaaacgag
tgtcctctggacccaggtggctactttattgtcaaaggtcaagagaaggttattctgata
caagaacagctttccaagaacagaatcattgtggagcaggacaggaagggtgcagttgga
gcctcagtgaccagctccacccatgagaagaagagtaggaccaacatgattgtaaaacag
ggtcgcttttacctgaagcacaacaccttgtcagaggatgcaccaattgccatcatcttc
aaggcgatgggtgtggagagtgaccaggagattgtgcagatgatcggcactgaggagcat
gtgatggctgccttcggccccagtctggaggagtgccagaaggctcagatcttcacacag
actcaggctctgaagtatatcgggaacaaagtacgacgacagcggatgtggggtggaccc
aagaaaaccaagatggaggaggccagagaactgctggcctcaaccatcctcacccacgta
cctgtgaaagagtttaacttccgggcgaagtgtatttatctagccgtcatggtgcggagg
gtcatcctggcccaggggaacaacaaagttgatgaccgcgattactatggcaacaagcgt
ctggagttggctggccagctgttgtccctgctatttgaggatttgtttaagaagttcaac
acggagctgaagaagatcgctgaccagatcatccccaagcagcgagctgctcagttcgac
gtggtcaagcacatgagacaggaccagatcaccaacggcatggtcaacgccatctccaca
gggaactggtcacttaagaggtttaagatggacaggcagggcgtgacgcaggtactgtcc
cggctgtcgttcatctcggccctgggcatgatgacgcgtatctcctcccagtttgagaag
acgcgcaaggtcagcggaccgcgctcgctgcagccctcccagtggggcatgctgtgtccc
tccgacacacctgagggagaggcctgtggcctggtgaagaacttggccctgatgacgcac
atcactacagacatggaggatgggcccatcatcaagctggccttcaacctgggcgtagag
gacgtcaacctgctgtgtggagaggagctctcctaccccagcgtcttcctcgtctttctc
aatggtaatatcctgggtgtgatccgtgaccactccaagctggtgaacaccttccggctg
atgcggagagcaggcttcatcaacgagtttgtgtccatctccaccaacctgaccgaccgc
tgcgtctacatctcctccgacgggggaaggctgtgcaggccctacatcatagtgaagaac
ggccagccggctgtcaagaacaaacacattgaggagctgtctcagggctacaggaacttt
gaggacttcctgcatgagagcttagtggagtatctggatgtgaatgaggagaacgactgc
agcatcgctctgtatgagcacatgatcaccaagactaccacacatctggagattgagccg
ttcactctgctgggtgtgtgtgcaggccttatcccgtacccccatcacaaccagtcgccc
agaaacacctaccagtgtgctatgggcaagcaagccatgggcaccatcggctataatcag
aggaaccgcatagacacgcttatgtacctgctggcctaccctcagaaacccatggtgaag
accaagaccatcgagctgatcgactttgagaagctcccggccggccaaaacgccacggtg
gccgtcatgagctacagtggctacgacatagaggacgcgctggtgctcaacaaggcctct
ctggaccgagggtttggccggtgcctggtctacaagaatgccaagtgtactctgaagcgc
tacactaaccagacatttgacaaggtgatgggtcccatgctggacgcagagacccgcaag
cccatctggaggcacagcatcctggacgctgatggcatctgctcccctggtgagaaggtg
gagaataagcaggtgctggtgaataagtatatgcccaccgtcacccagacgccactggag
ggcactgcccagcctggtcaaccacagtaccgggatgtgccaatcacctacaagggctcc
acagactcgtacattgagaaggtgatgatctcttccaatgcagaggacgccttcctcatc
aagatcctgctgcggcagaccaggcggcccgagatcggagacaagttcagcagccgacac
ggacagaaaggagtgtgtggtctgatcgtccctcaggaggacatgcccttctgtgatacg
ggcatctgccccgacatcatcatgaacccacacggctacccctcccgtatgacggtgggg
aagctgattgagctgctggcagggaaggcaggcgtgctggacggcaggttccactacggc
acggccttcgggggcagcaaggtcaaggacgtgtgtgaggacctcattcgctacggctac
aactaccagggcaaggactacgtcacctcggggatcacgggggagccactggaggcgtat
atctactttggcccggtgtactaccagaagctgaagcacatggtgctggataagatgcac
gccagagcccgcgggccccgggccgtgctcaccaggcagcccacagagggtcgttccaga
gatggtggcctacgattgggtgagatggaaagggactgtctgattggctatggggccagc
atgttactgctggagcgcctcatgatctccagtgatgcctttgaggtggacgtgtgtgga
cagtgtggcctgctaggctactcaggctggtgccactactgcaagtcctcgtgccacgtc
tcctccctgcgcatcccctacgcctgcaagctgctcttccaagaactgcagtccatgaac
attgtgccacgccttaaactggcccgctacaacgactga
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