Alosa sapidissima (American shad): 121724385
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Entry
121724385 CDS
T11137
Symbol
gtf2h1
Name
(RefSeq) general transcription factor IIH subunit 1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
asad Alosa sapidissima (American shad)
Pathway
asad03022
Basal transcription factors
asad03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
121724385 (gtf2h1)
09124 Replication and repair
03420 Nucleotide excision repair
121724385 (gtf2h1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
asad03021
]
121724385 (gtf2h1)
03400 DNA repair and recombination proteins [BR:
asad03400
]
121724385 (gtf2h1)
Transcription machinery [BR:
asad03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
121724385 (gtf2h1)
DNA repair and recombination proteins [BR:
asad03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
121724385 (gtf2h1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
Motif
Other DBs
NCBI-GeneID:
121724385
NCBI-ProteinID:
XP_041966843
LinkDB
All DBs
Position
11:18843141..18851691
Genome browser
AA seq
548 aa
AA seq
DB search
MAALSEEVLLVVKRVRQRKQDGTLYLMAERIAWGPEGKDRFTVSHLYADIRCQKISPDGK
AKIQLQLVLHTGESTTFHFANESSALKDREATKELLQQLLPKFKKKANKELEEKNRMLQE
DPVLFQLYKDLVVSQVISAEEFWANRLSMLSVEGSVANNKQDVGISAAFLADIRPQTDGC
NGLRYNLTADIIESIFRTYPAVKQKYAENVPHNLTEKEFWTRFFQSHYFHRDRINTGMQD
IFSECAKQDEKGLKSMVVQGVKNPMVDLLSLEDKSLDEGYGSKVAPSTSNSKPTVKENSN
SAIIKRFNHHSSMVLAAGLKKGDGANDQASETSSTDGNSRDSDFFQPPIKKVKLQEAIEY
EDLQSGSGPRMVALNLKKSDRYAHGPVPLQSHQYSTTQDIITAVNCIQHEMAGYKPCLTQ
VMSSNAVSSAIAALSPGGVLMQTSTQQTMNQLVPSDVQGELKQLYTAAGELLRHFWTCFP
VNTPFLEEKVVKMRSNLERFQMAKLRPFQEKIQRQYLSTNITGHLEDMLQAAYNKFHAWQ
TRRMMRKT
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
atggcagcactgtcggaggaagtgttgcttgtggtaaagagggttcggcaaaggaagcaa
gatggaaccttgtatttgatggcagagcgcatcgcttggggtcctgagggcaaggatcgc
ttcaccgtcagccacctctatgctgatatccgatgtcagaaaatcagccctgatgggaaa
gccaagatccagctacaactggttctgcatactggagagagcaccacttttcactttgcc
aatgagagcagcgctcttaaggaccgtgaggccacaaaagaactgctccagcagttgcta
cctaagttcaaaaagaaagccaacaaggagctcgaagagaagaacaggatgctgcaggaa
gaccctgttctgttccaactctacaaggacttggttgtgagtcaggtgatcagtgcagag
gagttctgggcgaatcggctgagcatgctttcagtggagggttccgttgccaacaataag
caggacgtggggatatcggctgctttcctggcagacattcggccacagaccgatggctgc
aacggtttaagatacaacctcactgccgacatcattgagtctatcttcagaacctaccct
gcagtgaaacagaaatatgccgagaatgtgcctcataacctaacagagaaagaattctgg
acgcgcttcttccagtcccattactttcacagagatcgcatcaacactggcatgcaggac
atcttctccgagtgtgccaagcaggacgagaagggcttaaaatctatggtggttcaaggt
gtcaagaacccaatggtagaccttttgtccttggaggataagagcttagatgaagggtat
ggttccaaagtggctccctccacctcgaacagtaaacccacagtgaaggagaacagcaac
tcagccatcatcaagcgcttcaatcaccacagctccatggtcctcgctgctgggctgaag
aaaggggatggtgctaatgaccaggccagtgaaactagcagcacagacgggaactccaga
gactcagacttcttccagccgcccattaaaaaggtgaaactgcaagaggctattgagtat
gaggacctgcagagtggttcaggacccagaatggttgccctaaacctgaaaaagtctgac
aggtacgctcacggtccagtgccactccaatcccaccagtactccaccacccaggatata
atcacggcggtcaactgcatccagcatgagatggccggctacaaaccttgccttacacag
gtgatgtccagtaatgctgttagctctgccattgctgccctgtcaccaggaggagtcctt
atgcaaacctctactcagcagaccatgaatcagctggtgcccagtgatgtgcagggtgag
ttgaaacagttgtacacagctgcaggagagcttctgaggcacttctggacctgtttccct
gtcaacacacccttcttagaagaaaaagtggtgaagatgagatcaaacttggaaagattt
cagatggcgaagctccgtccttttcaggaaaaaatccaacggcagtacttgagcactaac
atcactgggcacctggaggacatgctgcaggctgcctacaacaagttccatgcttggcag
actcggcggatgatgcgaaaaacctga
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