Alosa sapidissima (American shad): 121724470
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Entry
121724470 CDS
T11137
Symbol
rfwd3
Name
(RefSeq) E3 ubiquitin-protein ligase RFWD3
KO
K15691
E3 ubiquitin-protein ligase RFWD3 [EC:
2.3.2.27
]
Organism
asad Alosa sapidissima (American shad)
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
asad04121
]
121724470 (rfwd3)
Enzymes [BR:
asad01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121724470 (rfwd3)
Ubiquitin system [BR:
asad04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
121724470 (rfwd3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_RFWD3
zf-RING_2
Beta-prop_WDR5
WD40_CDC20-Fz
zf-RING_UBOX
WD40
Beta-prop_THOC3
zf-C3HC4
Beta-prop_WDR3_1st
WDR55
zf-C3HC4_2
zf-RING_5
zf-rbx1
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_WDR3_2nd
Rtf2
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
Beta-prop_RIG_2nd
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR36-Utp21_1st
zf-RING_Vps41
Beta-prop_SPT8
zf-Nse
Beta-prop_EML
WD40_2
Beta-prop_ACSF4
zf-ANAPC11
zf-RING_11
zf-UDP
NBCH_WD40
DUF6779
Rab11-FIP3
BBS2_Mid
Motif
Other DBs
NCBI-GeneID:
121724470
NCBI-ProteinID:
XP_041966985
LinkDB
All DBs
Position
11:15890500..15907882
Genome browser
AA seq
729 aa
AA seq
DB search
MDEAMDVDVHLGGINAPGWYSLRTLSTAQGILLPEIIDDSGSSTEVEEEEEPRDQAPPVL
TAPSQLPNSWLLNRRAEAEPQRSTLALRRRRMARRVLSNSQSGHPTRGPLDTLLRASAAS
DPERLSDTTEVISDSEEEETQEGAAAIVPAAEPPPPAAASAATEASGPGPPPPDLHGHPP
LASAPQAHPGPPPSSSQGSAAQSAPLQGVTLSEPVDGAPPDLVEVTVQQGATELVPTPAV
SPAASPVPPEEEGEGESCPICFEPWTTSGDHRLAALRCGHLFGHTCINRWLRGDGAKCPQ
CNKKAKRTDIVLLYARKLRAVDNTEQETLKRSLEQEQSLRRKAELECAQCRLKLQVANEE
CSKLRKQLQELRRLKAQVALGLSQSQSQSVSSKGHYVFSTAVMVSQVGGCRVMAFCEPLG
CLLASQPSAHSSLVPGFGVKKISTATMKACQYIPIHIKPIRGLAFSRQQDSLLLSGALDN
TIKLTSLLTNTVVQTYNTGAPVWSCCWCHDNNNYVYAGLTNGTVRVYDMRDTSTHVRELL
PQGTRCPVASLTYLPRAASSAFPMGGLLAGSLEGGCFWELQEGTNYQPNMLPLEAGNCMD
IQVEPESRHCLVTYRPGRSNPSLRCVLMEMNRTAQVCSCSPVQTFTAGASSKMLTKNSIF
RNPTSDGSMLVCAGDEASQSTMVWDAGSGALLQKLPSDLPVLDICPFQVNQGHYLASLTE
KMVKIYKWE
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atggatgaggcgatggatgtcgatgtccatttgggagggatcaacgcaccaggttggtat
tctctacggaccttgagcaccgctcaagggattcttttgccagagatcatagacgattcc
ggtagcagcacggaagtggaggaagaagaagaaccaagagaccaggctcctccagttttg
acagcaccgagccagttaccaaatagctggcttctgaaccgcagagctgaagccgagccg
caaaggtctactctcgcgcttaggaggagacgcatggctaggcgtgtgctgtctaactct
cagtcaggacaccctaccaggggtcctctggataccctcctgcgggcgtctgctgccagt
gaccccgaacgcctctccgacaccacagaggtcatcagtgactctgaagaagaagagacg
caagagggggcagctgccatagtcccagcagcagaaccaccaccaccagccgctgcatca
gcagcaacagaagcatcaggaccagggcctcctcctcctgacctccacggtcatcctccg
ctagcctctgccccgcaggcacaccctgggccaccaccgagctccagccagggctccgca
gcccagtcggccccactgcagggagtgaccctctcagagccagttgatggagctccacct
gatctcgtggaggttacagttcagcaaggagctacagagttagttccaacacctgctgtg
tctcctgctgcctcccccgtgcccccagaagaggagggggagggggagtcatgccccatc
tgcttcgagccctggaccacgtcgggagatcaccgcctggctgccttacgctgcggccac
ctgtttggccacacttgcattaaccgctggctgaggggggatggagccaagtgcccgcag
tgcaacaaaaaagccaaacgaacggatatcgtgctgctatacgctcggaaacttcgagct
gtagacaacacggaacaggagacactgaagagatccttggaacaggagcagtctctgcgc
agaaaggctgagctcgagtgtgctcagtgtcggctgaagctgcaggtggcaaacgaggag
tgtagcaaactgcgcaaacagttacaggagctgaggaggctgaaagcacaggtggccctg
ggcctcagccagtctcagagccagtctgtgtcctccaagggccattacgtcttctccacg
gcagtgatggtgtcccaggtgggcggctgcagggtgatggccttctgcgagcccctgggc
tgcctactggcctcccagccctctgcccactcctcactcgtccctggctttggggtgaag
aagatcagcacggccaccatgaaggcctgccagtacatccccatccacatcaagcccatc
cgtggcctggctttcagccgccagcaggacagcctgctgctctccggcgctctggacaac
acaatcaagctcaccagcttgttgacgaacacggtggtccagacctacaacactggcgcg
cctgtgtggagctgctgctggtgccatgacaacaacaactacgtgtacgcaggcctcact
aacggcacagtgcgggtctacgacatgcgtgacaccagcacacacgtgcgtgagttgctc
ccacagggcaccaggtgcccagtggcctctctgacatacctccctcgcgcggcctccagc
gcatttcccatgggcggcctgctggcgggctccctggagggtggctgcttctgggagctg
caggagggcaccaactaccagcccaacatgctgcccctggaggccggcaactgcatggac
atccaggtggagccagagagccgccactgcttggtgacgtacaggccggggcgctctaac
ccgtctctgcgctgtgtcctcatggagatgaaccgcacagctcaggtgtgctcctgttcg
ccagtgcagaccttcactgcaggagcctcttctaagatgctcaccaagaactccatcttc
aggaaccccaccagtgacggctcaatgctggtgtgcgcaggcgatgaagcctcacaatca
accatggtatgggacgctggcagtggggctctgctgcagaaactaccatctgacctccca
gtcctggacatctgccctttccaggtgaaccagggtcactacctcgcctcactgacagag
aagatggtcaagatctacaagtgggaatga
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