Alosa sapidissima (American shad): 121724490
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Entry
121724490 CDS
T11137
Name
(RefSeq) unconventional myosin-Va-like
KO
K10357
myosin V
Organism
asad Alosa sapidissima (American shad)
Pathway
asad04814
Motor proteins
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09140 Cellular Processes
09142 Cell motility
04814 Motor proteins
121724490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asad03019
]
121724490
04131 Membrane trafficking [BR:
asad04131
]
121724490
03029 Mitochondrial biogenesis [BR:
asad03029
]
121724490
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
asad04812
]
121724490
Messenger RNA biogenesis [BR:
asad03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Cargo complex
121724490
mRNA cycle factors
P-body specific factors
121724490
Membrane trafficking [BR:
asad04131
]
Others
Actin-binding proteins
Myosins
121724490
Mitochondrial biogenesis [BR:
asad03029
]
Mitochondrial quality control factors
Mitochondrial dynamics
Retention of mitochondria
121724490
Cytoskeleton proteins [BR:
asad04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Myosins
121724490
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Myosin_head
DIL
IQ
nSTAND3
NPHP3_N
DUF7436
AAA_16
Motif
Other DBs
NCBI-GeneID:
121724490
NCBI-ProteinID:
XP_041967019
LinkDB
All DBs
Position
11:complement(22366608..22395317)
Genome browser
AA seq
1801 aa
AA seq
DB search
MATSELYSKHARVWIPDKVEVWRPADLLRDYAPGDASLLLQLEDGTELEHKLPKDRCLPP
LRNPDILVGENDLTALSYLHEPAVLHNLRVRFIDSRLIYTYCGIVLVAINPYESLRIYGS
DIINAYSGQNMGDMDPHIFAVAEEAYKQMARDEKNQSIIVSGESGAGKTVSAKYTMRYFA
TVSGSSGETNIEERVLASSPIMEAIGNAKTTRNDNSSRFGKYIEIGFDRKYQMMGANMRT
YLLEKSRVVFQASEERNYHIFYQLCACSHAPEFKDLKLGRADDFHFTNQGKNLVIDAVDD
EKEMKSTRKALTMLGIDEAQQMGLFRILAGVLHLGNVEIRPRGADSSTVCPDSPPLLTFC
EVMGVPVQEMSHWLCHRKLKTASETYNKPMSGVQALTGRDALAKHVYARLFSWIVARINA
ALQNAGKRHAFIGVLDIYGFETFEVNSFEQFCINYANEKLQQQFNLHVFKLEQEEYMKED
IPWTLIDFHDNQPCISLIEAKMGILDLLDEECRMPKGSDGSWAQKLYSTHGKSSAHFQKP
RMSNTAFIVLHFADQVEYECEGFLEKNKDTVNAEQISVLRSSKFELLLELLEEEEECVSA
AGGGPVHTRLKTARSSTQLTHTRKSVGLQFRNSLHLLMETLSTTAAHYVRCIKPNDQKAP
FTLDPVRAVQQLRACGVLETIRISAAGFPTRWTYQEFFTRYRVLMKQADALPDRKVACRK
ILPQLVEDEDKYQFGKSKIFFRAGQVAYLEKLRSDRLRAACIRIQKTIRCWLQRKKYLRM
RRAAVTIQRHVRGHQARRLALFLRHSRAAVVIQKYQRMWAARRKFQRKRAIALLLQRLYR
GYAARREHQRMLYERKVCLLQRWVKGWHARVRYRRVRAAVVLLQSCVRRMLARRELKRLR
VEARSVEHFKKLNVGMENKIMQLQRRIDEQHKENRVLGEKLNALEASHTSERERLIGQLD
RLKGIEENSRSQLDRVSCLEAELEASRQELERSRQERLEDQQRAQVDRDALGQQVAELNK
QNVLLKSEKEELNRFIVELERKAEERGKAHEGNIQQLQSELNEERCRYQNLLSEHHKLEE
RHSNLKEQNASRASPQRKDSTSSLAASDSTLSSGFGEGEEDRKKGERSSTGRDMSLLLTL
QKKVTELERDKHNLQNELDSREDQLHTSKAKDEEEFKKTLLSELDQEGLKRQELESANRK
LKRDLSELREALSQSAGSGTAAPGSPAYNVLLEQLSSANEELELRKEEVLILHSQLVGLE
TQKNKESDNSANSSRSLTLDIHELNEDGELWMANEGLKETNTLLLSQLQSMTEEVESVRS
ELQRALQERDQQQELLTQSLKLPQDARIPASLQHEISRLTKHNLELVEQAERQDKVLRKL
KKQLKVYMKRAGDGEMALELGSVDGLPKSTLPRKERDCRGMLVCKREDESRLLKILITEM
RPRGVAVSMVPSLPAYILFMCLRHADFSNDDQRATKLLNSTINSIKGVMKRKGDNFEMVS
FWLANTCCFLHCLEQYSGEEIYTKHNTPQQNEHCLVNFDLADYRQVLCDLAIQIYQQLIK
CVENILQPMIVPGMLEQDSIPGVLGVKATGMRKRTCSMTEESGAATLDSILRTLSGFHAL
LQQHGIPPQLLRLAVKQQFYIICAATLNNLLLRKDMCSWSKGLQIRYNVCQLEDWLQDKG
LLNSGAREMLEPLIQAAQLLQVKKKSQEDAQAIASMCTALTAAQIVKILNLYTPVNEFEE
RVSSTFIKTIEACLQPRKESSQLLMETKNIFPVTFPFHHSSVALETILIPNSLNLGFLTR
V
NT seq
5406 nt
NT seq
+upstream
nt +downstream
nt
atggcaacttcggaactttactcaaagcatgctcgtgtgtggatccctgacaaggtggag
gtgtggcggccggcggacctcctgagggactatgcacctggagacgcgtcgctgctgctg
cagctggaggacggcacggagttggagcacaagcttccgaaggaccgttgcctgcccccc
ctgcggaaccctgacatcctggtgggggagaacgacctgacggccctgagctacctgcat
gagccggccgtgctgcacaacctccgcgtgcgcttcatcgactcgcggctcatctacaca
tactgcggcattgtgttggtagccatcaatccatacgagtctctgcgcatctatggatct
gacatcattaatgcgtacagtgggcagaacatgggggacatggacccccacatctttgca
gtggctgaagaggcttacaaacagatggccagagatgagaagaaccagtccatcatagtg
agtggggaatctggggcggggaagacggtctcggccaaatacaccatgaggtactttgcc
acggtcagtgggtcatcgggcgagaccaacatcgaggagcgagtgctggcgtccagtccc
atcatggaggccattgggaatgccaaaaccacccgtaatgacaacagcagccgctttggg
aagtacatcgagattgggtttgacaggaaataccagatgatgggtgccaacatgaggacg
tacctgctggagaagtccagagtggtgttccaggccagtgaggagcggaactatcatata
ttttatcagctgtgcgcttgctctcacgctcctgaatttaaggacctgaaattaggccga
gcagatgacttccatttcaccaaccagggaaaaaacctagttatagacgctgtggacgat
gagaaagagatgaagtcaaccaggaaggctttgactatgttgggcattgatgaggcccag
cagatgggtctgttcaggatcctggccggagttcttcacctggggaacgtggaaatcagg
ccgcggggggctgacagcagcactgtgtgtccagacagccctcccctgctgacgttctgt
gaggtgatgggcgtaccggtgcaggagatgtctcattggctgtgccacaggaagctgaaa
acggcgtcggagacgtacaacaagcccatgtccggagtgcaggcactgaccggccgggac
gccctggctaagcacgtctacgcccgcctcttcagctggatcgtggcccgcatcaacgca
gcgctgcagaatgctggcaagcgacacgccttcatcggggttctagacatctacgggttt
gagacgtttgaggtcaacagctttgagcagttctgcatcaattatgccaatgagaaactc
cagcagcagtttaatttgcatgtgtttaagttggagcaggaggagtacatgaaggaggac
atcccatggacgctgatcgatttccatgacaaccagccctgtatcagcctgatcgaggcc
aagatgggcatcttggacctgctggatgaagaatgcagaatgcccaaaggttctgacggg
tcgtgggcccaaaagctgtacagcacccacgggaaaagcagtgctcactttcagaagccg
cgcatgtccaacaccgccttcatcgtcctgcacttcgctgaccaggtggagtatgagtgt
gaggggtttctggagaagaataaagacacagtgaatgcggagcagattagtgtcctgagg
tccagtaagtttgagctgctgctggagctccttgaggaggaggaggagtgtgtatctgca
gctggagggggacctgttcacactcgcctgaagacggcacgcagcagcacccaactaaca
cacacacgcaagagcgtcggcctgcagttccggaactctctgcatcttctcatggagact
ctgagcaccacagctgcccactatgtacgctgcatcaaacccaatgaccaaaaggcaccc
ttcacgctggacccagtgcgggcagtacagcagctcagagcgtgtggagttctggagacg
attcgcatctcagcggccggattccccaccaggtggacataccaggagttcttcacacgg
taccgtgttctcatgaagcaggccgacgcgctgcctgatcgcaaagtagcgtgcaggaag
attctgcctcagctggttgaggatgaggacaaatatcagtttggcaagtctaagatcttc
ttccgggcggggcaggtggcttacctggagaaactacggtctgataggctgcgggctgcc
tgcatacggatccagaagacgattcgctgctggctgcagcgcaagaagtacctgcgcatg
cggagggcagctgtcaccatccagagacacgtcaggggccaccaggcgcgccgcctggca
ctgttcctgcggcactcccgagcggcggtggtcatccagaagtaccagcgcatgtgggca
gcgcggagaaagttccagcgcaagcgggcaattgccctgctcctccagcgtctctacagg
ggctacgctgccaggagggagcaccagcggatgctgtacgagcgtaaagtgtgcctgctg
cagcgctgggtgaaaggctggcatgcgcgggtgcgttaccggcgtgtgcgtgcggccgtg
gtgctgctgcagagctgcgtacgacgcatgctggcccgccgtgagctcaagaggctgcgt
gttgaggcccgctccgtggaacacttcaagaaactcaacgtcggcatggagaacaagatc
atgcagctgcagcgcaggatcgatgagcagcacaaagagaaccgtgtgctcggggagaaa
cttaatgcactcgaggccagccacacctctgagcgggagcgtttgattggccagctggac
cggctaaaggggatagaggagaacagcagaagccaattggatcgtgtgagctgtctcgag
gcggagctagaggccagcaggcaggagctggagcgcagccgccaggagaggctggaggac
cagcagagggcacaagtggacagggatgccctggggcagcaagtggcagagctgaacaag
cagaatgtcctcctgaagagtgagaaggaggagctcaacagattcattgttgaactagag
aggaaggcagaggagcgggggaaggctcatgaagggaacattcagcagctgcagtcggag
ctgaacgaggagcgatgtcgctaccagaaccttctctcagaacaccacaagttagaggaa
cgccacagcaacctgaaggagcagaatgcaagcagagcatctccgcagaggaaggattcc
acgtccagcctggctgcctctgacagcaccctcagctctggcttcggggagggggaggag
gaccggaaaaaaggggagaggagctccactggtcgggacatgtctctgctgctcacactg
cagaagaaagtgacagagctagagagagacaaacacaacctgcagaatgagctggactcc
agagaggaccagctacacaccagcaaagccaaggatgaagaggagttcaagaagactctg
ctgtcagagctggaccaggagggcctgaagcgacaggagctggagtccgcgaacaggaag
ctgaagcgggacctgagtgagctccgggaggctctcagccaatcagctggctctggtacg
gctgcccctggatcaccagcctataatgtgctgttggagcagctcagctcagccaatgag
gaactggaactgcgcaaggaggaggtgcttattcttcactcccagctggttggtctggaa
acccaaaagaataaggaatcagataattctgccaacagcagcaggtccctgacccttgac
atccatgagctgaatgaggatggggagttgtggatggccaacgaggggctgaaggagacc
aacacgttgctgttgtctcagctgcagtccatgactgaggaggttgagagtgtgcgctct
gaactgcagagggcgctgcaggagcgtgaccagcagcaggagcttctgacccaaagcctg
aagcttcctcaagacgcccgcattcctgccagcctccagcatgagatcagcaggctcacc
aaacacaacctggaactggtggagcaggcggagagacaggacaaggtgctccgcaagctg
aagaagcagctgaaggtctacatgaagagggctggagacggagagatggcgttggagctg
ggctctgtggatggtcttcccaaatcgaccctgccccgtaaggagcgcgactgcaggggg
atgctggtctgcaagagggaggacgaaagcagactactgaaaatcctcatcacagaaatg
cgtccacggggtgtagctgtcagcatggtccccagcctgcctgcctacatcctcttcatg
tgcctccgccacgccgacttctccaacgacgaccagcgcgccaccaaactcctcaactcc
accatcaacagcatcaagggagtcatgaagaggaaaggagacaactttgagatggtgtcg
ttctggctggccaacacgtgctgcttcctgcactgtctggagcagtacagtggagaggag
atttacaccaagcacaacacccctcagcagaatgagcactgcctggtgaactttgacctg
gctgactaccgtcaggtgctgtgtgacctagccattcagatctaccagcagctcatcaaa
tgtgtggagaacatcctgcagcctatgatcgtgccggggatgctggagcaagactccatc
ccaggagtgctgggggtgaaggcgacaggcatgcggaagcggacgtgcagtatgactgaa
gagagtggcgcagcgacgctggactccatcctgcggacgctgagcggtttccacgcgttg
ctgcaacagcacggcattccgcctcagttgctccggctcgctgtcaagcagcagttctac
atcatctgtgccgccacgctcaacaacctgctgctgcgcaaggacatgtgctcctggagc
aaaggcctgcagatcaggtataacgtgtgtcagctggaggactggctgcaggacaagggt
ctgttgaacagtggggccagagagatgctggagcctcttatccaggcagctcagctgctg
caggtcaagaagaaatcacaggaggatgcccaggctatcgcctccatgtgcactgcactt
accgccgcacagatcgtgaagatcctgaacttgtacactccggtgaacgaatttgaggag
agggtctcctcgacattcattaagaccattgaggcctgtctgcagccccgtaaggagtcg
tctcagctcctcatggagacgaagaacatcttccctgtgacgttccccttccatcactcc
tccgttgccctggaaaccattctcattccaaacagcctcaacctgggcttcctcacgcga
gtgtga
DBGET
integrated database retrieval system
