Alosa sapidissima (American shad): 121724491
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Entry
121724491 CDS
T11137
Symbol
myo5c
Name
(RefSeq) unconventional myosin-Vc
KO
K10357
myosin V
Organism
asad Alosa sapidissima (American shad)
Pathway
asad04814
Motor proteins
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09140 Cellular Processes
09142 Cell motility
04814 Motor proteins
121724491 (myo5c)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asad03019
]
121724491 (myo5c)
04131 Membrane trafficking [BR:
asad04131
]
121724491 (myo5c)
03029 Mitochondrial biogenesis [BR:
asad03029
]
121724491 (myo5c)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
asad04812
]
121724491 (myo5c)
Messenger RNA biogenesis [BR:
asad03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Cargo complex
121724491 (myo5c)
mRNA cycle factors
P-body specific factors
121724491 (myo5c)
Membrane trafficking [BR:
asad04131
]
Others
Actin-binding proteins
Myosins
121724491 (myo5c)
Mitochondrial biogenesis [BR:
asad03029
]
Mitochondrial quality control factors
Mitochondrial dynamics
Retention of mitochondria
121724491 (myo5c)
Cytoskeleton proteins [BR:
asad04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Myosins
121724491 (myo5c)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Myosin_head
DIL
IQ
Myosin_N
Csm1_N
nSTAND3
AAA_16
AAA_22
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
121724491
NCBI-ProteinID:
XP_041967020
LinkDB
All DBs
Position
11:complement(22340762..22366351)
Genome browser
AA seq
1730 aa
AA seq
DB search
MALSELYTKYNRVWIPDPEEVWQSAEILKDYKPGDDVLELQLENGTEMRYPVETGNVQLP
HLRNPDILVGENDLTALSYLHEPAVLHNLRVRFVESKIIYTYCGIILVAVNPYKQLPIYG
DAVIHAYSGQNMGDLDPHIFAVAEEAYKQMARNNRNQSIIVSGESGAGKTVSARYAMRYF
AVVSKSSSKTRVEDKVLASNPITEAIGNAKTTRNDNSSRFGKYTEISFDQRHQIIGANMR
TYLLEKSRVVFQSENERNYHIFYQLCACADQPDFKHLRLLSADQFQYTCLGGATEIDGVD
DRADMAETRRTFTLLGLKEDFLSDVFKVLAAILHLGNVTIKTTSGEKSAVSTSDVHLAVF
CELVCVDVDSVCRWLCHRRLVLLAETVVKPVPMERAVNARDALAKHIYAHLFDCVIHRIN
TALKVPGKQHSFIGVLDIYGFETFDVNSFEQFCINYANEKLQHQFNLHVFKLEQEEYMKE
DIPWTLIDFYDNQPVIDLIEAKMGILDLLDEECLFPQGTDLNWLQKLYNFLGSNPLFSKP
RLSNQAFVIQHFADQVEYQCKGFLEKNRDTLYEELVDIMKASKFSLLADFFREESQTAVR
GVRVKAATPAVKPANKQLRTTVGNKFRSSLYLLMETLNATTPHYVRCIKPNEDKQPFEYD
SKRVVQQLRACGVLETVHISAQSYPSRWTYIEFYSRYSILMTQAEVVLNDKKQTCKSVLQ
RLIPDSDQYKFGRTKIFFRAGQVAYLEKLRLDRLRAACVTIQSHVRGWSQRRRFLRLRNA
ACILQQYIRGQRRIRQTVTAAALKQGWASVVIQKHCRGYLVRRVYKLVLVATVKIQAYIR
GWLARKRHKKLVEEQKALVLQKYARAWLVRRRFQTMRRLVLNVQLSYRVQQLRKKLEEQG
KENRGLMERLTGLANAHSQGLDKLQALEAELSKSANNRMSLEKQEKRNKEAANQMITQLQ
TQKAALEAEKKTMEAKMAESAQQMRDNFSELQKRLQEDLEKEERRRKIAENNLENQKEDS
GREVEVLQLENRQLREEKLRLQMQLEEEKHQIAELQEQITQLTKHIKVLPELRKDIHNLQ
SQKTEQERRVREQTHQAKVKMNVIIKQLLGDRSSEDILSAASDDAEEDGNLLLAFDGLQK
ATRVMETQLRDQREGFESQVEVLSFKMEHLQKENEQLQNLFQEKSDVNESIRQEVARLTA
ENMVIPELKQQVGELLRQKQDLETQQQEETSQMMGRIEEVSTRLQNDLQEESSRCRQFEQ
QLEEVQRRLEEQQEQQEQLLKQQQAEQEAKSRLRQETSRLTADNMGLEEQLDMKDRLIKK
LQDQIRSLNAPDKANQKATPAVPREYLGMLEYRREDEPKIIQNLILDLRPRGVVVNMFPG
LAAHLLFMCVRHADYLNDGAKLKSLMHGIITGLKKVIMEHQEDFEALSFWLSNTCHLLNC
LKQYSGEEEFMKHNTPRQNKNCLTNFDLSEHRQIFSDLAIRIYHKFIAAMETMVTPLIVP
AMLEHESLQGISSMKPSGLRKRSNSVYEEAAEACSMASILQLLSGFHGSMLQHGMDSELV
KQAVRQLFYLLGATCLNTILLRKDMCSCRKGMQIRCNISYLEEWLKEKDLQGSSAMETLR
PLSQAAWLLQVNKTSDEDAREIRDSCPELSPVQIVKILNSYTPIDDFEKRVASSFVRKVQ
ALLQEREGSSQLMVDTQYRFQVTFPFCASAQALELLQVPSSLRLSFLTRI
NT seq
5193 nt
NT seq
+upstream
nt +downstream
nt
atggctctgtcagagctatacactaagtacaaccgcgtctggatcccggacccagaggaa
gtgtggcagtctgcggagatcctgaaagactacaaaccgggagatgacgttctggaacta
cagctcgagaatggcacggagatgcggtacccggtggaaacggggaacgtgcagctccca
cacctgcggaaccctgacatcctcgtgggggagaacgatctcaccgccctcagctacctt
cacgagccggccgtcctgcacaacctcagagtgcgtttcgtggagtccaaaatcatctac
acgtactgcgggatcatcttggttgcggtgaacccctacaagcagctgcccatctatggg
gacgcagtcatccacgcctactccggccagaacatgggcgatctggacccacacatattc
gctgtggcagaggaggcctataagcagatggccaggaacaacaggaaccagtcgatcatc
gtgagtggggagtcgggtgctgggaagacggtctccgcgcgctacgccatgcgctacttc
gctgtggtcagcaagtccagcagcaagacccgagtggaagacaaagttctggcctctaac
ccgatcacagaggctattgggaatgcaaagaccaccagaaacgataacagcagccgcttt
gggaagtacacagagatcagctttgaccagcggcatcagatcatcggggccaacatgagg
acgtacctgctggagaagtcccgagtggtgttccagtcggagaacgagaggaattaccac
atcttctaccagctgtgtgcctgtgctgaccagcccgacttcaagcacctccgactgtta
agtgctgatcagttccagtacacctgcctgggaggagcaacggagatcgatggtgtggac
gacagagctgacatggcagagactcgccgcactttcactctgctgggcttgaaggaggac
tttctatccgacgtgttcaaggtgttggcagcgatcctccacttgggcaacgtcaccata
aagaccaccagtggggagaagtctgccgtcagcaccagtgatgtccacctggcggtgttt
tgtgagctggtgtgtgtggacgtggacagtgtgtgtcgctggttgtgccatcggcggctg
gtgctgttggcagagacggtggtgaagccggtgcccatggagcgggcggtcaacgcccga
gatgccctggccaagcacatctacgcccacctgttcgactgcgtcatccacaggatcaac
actgccctcaaggtcccagggaagcagcattccttcattggggttctggacatctacggt
tttgagacatttgatgtgaacagctttgagcagttctgcatcaactatgccaatgagaag
ctccagcaccagttcaaccttcatgtgtttaagctggagcaggaggagtacatgaaggag
gacatcccatggacgctgatcgatttctatgacaaccagcccgtcattgatctgattgaa
gccaagatgggcattctggacctgctggatgaggagtgcctgtttccccagggtacggac
ctgaactggctgcagaagctgtataacttcctgggctccaatcctctgttcagcaagccc
cggctctccaatcaggcctttgtcattcagcacttcgcagaccaagtggagtaccagtgt
aaaggcttcctggagaagaacagagacaccctatatgaagagcttgtggacatcatgaag
gccagtaagttttctctcctggcagacttcttccgggaggaatcccagacggcggtccga
ggagtcagggtgaaggccgccactccagcagtgaagcctgccaacaaacagctccgaact
acagtgggaaacaagttccgcagttctctgtacctgctgatggagactctgaacgccacc
acacctcattatgtgcgctgcatcaagcccaacgaggacaagcaaccctttgagtacgac
tccaagcgtgtggtccagcagctccgagcctgtggggttctagagacggtccacatcagt
gcccagagctacccatccaggtggacctacatcgagttctacagtcgttacagcatcctg
atgacacaggcagaggtggtcctcaacgacaagaaacaaacgtgcaagtctgtgctacag
agactcattcctgactctgaccagtacaagtttggccgcaccaagatcttcttccgggcg
ggccaggtggcgtaccttgagaagctgcggctggaccgtctgagggcagcgtgtgtcacc
atccagtcgcacgtgagggggtggagccagagacgcaggttcctgcggctgaggaacgca
gcctgcatcctgcagcagtacatccgcgggcagagacgcatcaggcaaacggtgacagcc
gcggccctcaaacaaggctgggcttcagtggtcatccagaagcattgccgtggttacctg
gtgcgaagagtctacaagcttgtcttggttgctacagtgaaaatccaggcctacattagg
ggatggcttgctcgcaagcgccacaaaaagctggtggaggagcagaaggccctggtgctg
cagaagtacgctcgggcctggttggtcagacgccggttccagaccatgcgccgtctcgtg
ctcaacgtgcagctctcctaccgtgtgcagcagctcaggaagaaactcgaggagcagggt
aaagagaaccgtggcctgatggagaggctgacaggcctggccaacgcccactctcaggga
ttggacaagctgcaagcgctggaagcggagctgagcaaatcagccaataacagaatgtcc
ttagagaagcaggagaagaggaacaaggaggcagccaatcagatgatcacccagctgcag
actcagaaagccgctctagaggcagagaagaagaccatggaggccaagatggccgagagc
gctcagcagatgagagacaacttcagtgagctgcagaagagactgcaggaggacctggag
aaggaggagaggagaaggaagatcgcagagaacaatctggagaaccagaaggaggactca
ggacgggaagtggaggttctgcagctggagaaccggcagctacgggaggagaagctgcgg
ctgcagatgcagctggaggaggagaaacaccagatcgcagaactgcaggagcagatcacg
cagctcaccaaacacatcaaggtgttgcctgagctgaggaaagatatccacaacctccag
tcccagaaaactgagcaggagaggagagtgagagaacaaacccaccaagctaaagttaag
atgaacgtgatcatcaaacaacttctgggggaccggagcagtgaggacatcttgtcagct
gcctcagacgacgcagaggaggatgggaatctgctgctggcttttgatggcctccagaag
gcaacaagggtgatggagacacagctgcgtgatcagagggagggctttgagagtcaggtg
gaggtgctgagctttaagatggagcacctgcagaaggagaacgaacagttgcagaatctc
ttccaagagaagagcgatgtcaatgagagcatccgccaggaggtggcgcgacttaccgct
gagaacatggtgatccccgaactgaagcaacaggtcggtgagctgctcagacagaagcag
gacttggagacccagcagcaggaggagaccagtcagatgatgggccgcattgaggaggtg
tcaaccagactccagaatgatcttcaggaggaaagctcccgctgcaggcagtttgagcag
cagctggaggaggtgcagagaaggttagaggaacagcaggagcagcaggagcagctgctc
aagcaacagcaggccgagcaggaggccaagagcagactccggcaggagacctccagactc
accgcagacaacatgggtctggaggagcagctggacatgaaggatcgactcataaagaag
ctacaggaccagattcgctcactaaatgctccagacaaggccaatcagaaagcaacaccc
gcagtgcccagagagtacctggggatgctggagtaccgacgggaggatgagcccaaaatc
atccagaacctcattctggacctgcgtcccagaggcgtggtggtgaacatgttcccaggg
ctggcggctcacctgctcttcatgtgcgtgcgacacgccgactacctcaacgacggggcc
aagctcaaatccctgatgcacggcatcatcactggcctcaagaaggtcatcatggagcat
caggaggactttgaggcgctgtccttctggctgtccaacacctgccacctgctcaactgc
ctgaagcaatacagcggagaggaggagttcatgaagcacaacacaccccgtcagaacaaa
aactgcttgacgaactttgacctttcagagcacaggcagatcttcagtgacctcgctatc
cggatctaccacaagtttattgctgccatggagaccatggtcacccctctcattgtgcct
gctatgttggagcatgagagcttgcagggcatctccagcatgaagccgtcgggcctgcgg
aagcgctccaacagcgtgtacgaggaggcggccgaggcctgcagcatggcctccatcctc
cagctgctcagcggtttccacggcagcatgctgcagcacggcatggacagcgagctggtc
aagcaggcggtcaggcagctcttctacctactgggcgccacctgcctcaacaccatcctg
ctgcgcaaggacatgtgctcctgccgcaagggcatgcagatcaggtgtaacatcagttac
ctggaggagtggctgaaggagaaggatctgcagggatccagcgccatggaaacgctccgg
cctctctcccaggctgcctggctgctccaggtcaacaagacgagcgacgaggacgcgcgc
gagatccgtgacagctgccccgagctctcacctgtgcagattgtaaagatcctcaactcc
tacacccccattgatgactttgagaagcgggtggcttcctcgtttgtgcgcaaggttcag
gcgctgctgcaggagcgcgaggggtcatctcagctcatggtggacacacagtatcgcttc
caggtcaccttccccttctgcgcctccgctcaggcactggagctgctacaggtcccctcc
agtctgcgcctctctttcctcacccgcatctga
DBGET
integrated database retrieval system
