Alosa sapidissima (American shad): 121724605
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Entry
121724605 CDS
T11137
Symbol
lrrc4ca
Name
(RefSeq) leucine rich repeat containing 4C, genome duplicate a
KO
K07523
netrin-G1 ligand
Organism
asad Alosa sapidissima (American shad)
Pathway
asad04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
121724605 (lrrc4ca)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
asad04515
]
121724605 (lrrc4ca)
Cell adhesion molecules [BR:
asad04515
]
Immunoglobulin superfamily
NGL family
121724605 (lrrc4ca)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
I-set
Ig_3
ig
V-set
LRR_14
Ig_2
LRR_9
LRRNT
LRRCT
Sp38
DUF7617
Ig_6
LRR_RPS2
Syndecan
Motif
Other DBs
NCBI-GeneID:
121724605
NCBI-ProteinID:
XP_041967219
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All DBs
Position
11:31065267..31130407
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AA seq
648 aa
AA seq
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MLNKMTSSPQQQQTMRGPRWNRALSDPLFVLLLFLQLLVVAGLVRAQTCPSVCSCSNQFS
KVICTRRGLRDVPDGISTNTRYLNLQENLIQVIKVDSFKHLRHLEILQLSKNQIRNIEIG
AFNGLSSLNTLELFDNRLTTIPNGAFEYLSKLKDLWLRNNPIESISSNAFNRVPSLRRLD
LGELRRLTYISDTAFEGLSNLRYLNLGMCNLKEIPNLHPLVRLGEMEMSGNQLANIRPGS
FKGLVHLQKLWMMHAQIQTIERNAFDDLQSLVELNLAHNNLTLLPHDLFTPLHHLERVQL
HHNPWNCNCDILWLSWWLKEMVPGNTSCCARCSSPASFRGRYIGELDQSNFHCYAPVIVE
PPADLNVTEGMAAELKCRASSLTSVSWITPNGSIVTHGNYQVRISVLNDGTLNFTNVTMQ
DTGTYTCMVSNSAGNTTASATLNVSSTETSTFTYFTTVTVETMEHEEGHATVPQRVGPTP
SSGLWESSSTLATTTTTAAARLPQSTKSTERPYTVPVTTLGEGPFNGLDEVMKTTKIIIG
CFVAITLMAAVMLIIFYKMRKQHHQQNHHAPARSIEIITVDEDCVPGGQAMERHLALAQL
EHEHLNHYNANFKTPYNHVTTINSIHSSAHEPLLIRAGSKDNVQETQI
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atgttgaacaagatgacgtcctctccgcagcagcagcagaccatgagaggtcctaggtgg
aaccgggccctgtccgacccgctgttcgtgctgctgctcttcctccagctgctggtggtg
gcgggcttggtgcgtgcccagacctgtccttctgtctgctcctgcagcaaccagttcagc
aaggtcatttgcactcgccgcggcctgcgcgacgtgcccgacggcatctccaccaacacg
cgctacctgaacctgcaggagaacctcatccaggtgattaaggtggacagcttcaagcac
ctgcgccacctggagatcctgcagctcagcaagaaccagatccgcaacatcgaaattggc
gccttcaacggcctgtccagtctcaacacactggagctgttcgacaaccggctcaccact
atccccaatggggccttcgagtacctgtccaagctcaaggatctctggctccgtaataac
cccattgaaagcatctcgtccaatgccttcaaccgtgtgccctcgctgcggcgcctggac
ctgggagagctacgccggctcacctatatctcggacacggccttcgagggcctcagcaac
ctgcgctacctgaacttgggcatgtgcaacctgaaggagatccccaatctgcacccgctg
gtgcggctgggcgagatggagatgtccggcaaccagctggccaacatccgaccgggctcc
ttcaagggcctggtgcacctgcagaagctgtggatgatgcacgcccagatccagaccatc
gagcgcaacgcgttcgacgacctgcagtcgctggtggagctcaacctggcgcacaacaac
ctcacactgctgccacatgacctcttcacgccactgcaccacttggagcgggtgcagctg
caccacaacccctggaactgcaactgcgacatcctgtggctcagctggtggctgaaggag
atggtgccaggcaacaccagctgctgcgcccgctgcagcagcccggccagcttccgggga
cgctacatcggcgagctggatcagagcaacttccactgctacgcaccggtcatcgtggag
ccgcccgcagacctcaacgtgacggagggcatggcggccgagctgaagtgccgcgctagc
tcgctgacctcggtcagctggatcacgccgaacggctcgatcgtgacgcacggcaactac
caggtgcgcatctcggtgctcaacgatggcacgctcaacttcaccaacgtcaccatgcag
gacacgggcacgtacacgtgcatggtgagcaactcggcgggcaacactacggcctcggcc
acgctcaatgtctcctccaccgagaccagcaccttcacctacttcaccacggtcaccgtg
gagaccatggagcacgaggaaggccacgccaccgtgccgcagcgggtcggcccgacccct
tcctccggcctctgggagtcatcctccacgctagccaccaccaccaccaccgccgccgca
cgcctgccgcagtccaccaagtccacggagcggccctacaccgtccctgtcaccaccctg
ggcgaggggcccttcaacgggctggacgaggtgatgaagaccaccaagatcatcatcggc
tgcttcgtggccattacgctcatggcggccgtgatgctcatcatcttctacaagatgcgc
aagcagcaccaccaacagaaccaccacgccccagcacgcagcatcgagatcatcaccgtg
gacgaggactgtgtgcccggcgggcaggccatggagcgccacctggccctggcacagctc
gagcacgagcacctcaaccactacaatgccaacttcaagaccccctacaaccatgtgacc
accatcaactccatacacagctcagcgcacgaacctttgctaatccgtgcgggctcgaaa
gacaatgtgcaagagacccaaatctga
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