Alosa sapidissima (American shad): 121724654
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Entry
121724654 CDS
T11137
Symbol
rag1
Name
(RefSeq) V(D)J recombination-activating protein 1
KO
K10628
V(D)J recombination-activating protein 1 [EC:
2.3.2.27
]
Organism
asad Alosa sapidissima (American shad)
Pathway
asad04068
FoxO signaling pathway
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09130 Environmental Information Processing
09132 Signal transduction
04068 FoxO signaling pathway
121724654 (rag1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
asad04121
]
121724654 (rag1)
Enzymes [BR:
asad01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121724654 (rag1)
Ubiquitin system [BR:
asad04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
121724654 (rag1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RAG1_imp_bd
RAG1_ZnH2
RAG1_RNase_H
RAG1_C
RAG1
RAG1_pre-RNase_H
RAG1_ZnC2
RAG1_DNA-bd
zf-C3HC4
zf-C3HC4_2
zf-C3HC4_4
zf-RING_UBOX
zf-C3HC4_3
zf-RING_2
zf-RING_10
zf-RING_5
zf-RING_6
zf-rbx1
Motif
Other DBs
NCBI-GeneID:
121724654
NCBI-ProteinID:
XP_041967291
LinkDB
All DBs
Position
11
Genome browser
AA seq
1091 aa
AA seq
DB search
MESRTNIPRYAMPDEVQHTYSKFSDWKFKLFRVRSMEKAPLPSEPPPNAAVPPKSQGDED
LGHPGSLMKLCLGGKSKENVEAASQRVDQKLQEMDTHMGCLKSLCRLCGMSLRKAKGPEH
DVQDMLDESSRLSLRKMGCKAQGWPEVILKVFKVDVAADMETVHPQAFCHRCWMAAMRGG
GFCSFGLTRVPEWRPHTSGCLLCFPKTPSAFQRKGRKRAKALRRAPALAKRVKREAQSAA
AGVGGKRVLRALVDQQQQQQQQQQQQPPHGPVSRSSRVKPGAQRALWVKNITLCQRDHLS
SKLLPDDLPADFLRAVTCQVCDHLLSDPVQSPCRHLFCRGCILKYSRALGAQCPVCELPC
PEPTELKGPPKAFLVVLQSLPLLCPREGCGELVRMDSFRAHCQGHLHQRQPDEDDLLGPD
VDRDLDGYLPVNKGGRPRQHLLSLTRRAQKHRLKELKNQVRAFADKEEGGDTKSVCLTLF
LLALRAGNEHKQADELEAMMQGRGYGLHPAVCLAIRVNTFLSCSQYHKMYRTVKATSGRQ
IFQPLHTLRAAEKELLPGFHPFEWQPALKAVSSSWDVGILDGLSGWMSSVEDVPADTIAR
RFRYDVALVSALKDLEEDLMEGLREQGLDDSSVTGFNVTIKESCDGMGDVSEKHGGGPAL
PEKAVRFSFTIMSVSAQVEPEDDEPASSPVVIFHEMKPNSELSCKPLCLMFVDESDHETL
TAILGPVVAERDAMKESRLILSLGGLPRSFRFHFRGTGYDEKMVREMEGLEASGSTYICT
LCDSTRAEASHNMVLHTITRSHQENLERYELWRTNPFAESADELRDRVKGVSAKAFMETQ
PTLDALHCDIGNATEFYKIFQDEIGEMHARHGNSPPPGREERRRWRAALDKQLRKKLKLK
PVMRMNGNYARRLMTAEAVEVVCELVPSEDRRQLLRELVGLYLQMKPVWRSTWPARECPV
QLCRYSFNSQRFAELLSTAFKYRYDGKITNYLHKTLAHVPEIVERDGSIGAWASEGNESG
NKLFRRFRKMNARQSKTFELEDVLKHHWLYTSKYLQKFMEAHKNSAKALQATINPEEIVD
DSDMLLEVPDF
NT seq
3276 nt
NT seq
+upstream
nt +downstream
nt
atggagtcgcggacgaatatccccaggtatgcaatgccggacgaggtgcagcacacgtac
tccaagttctcggactggaagttcaagttgttccgggtcaggtccatggagaaggcgccc
ctgcccagcgagccccctccaaacgcggcggttcccccaaagtcccagggggatgaggat
ctggggcatccaggcagcctgatgaagctctgcctcgggggcaagagcaaggagaacgtg
gaggccgccagccagcgcgtggaccagaagctgcaggagatggacactcacatgggctgc
ctcaagagtttgtgccgcctctgtgggatgtcactgcgcaaagccaaggggcccgagcac
gatgtccaagacatgctggacgaatccagtcggctctccctgcgcaagatgggctgcaag
gcccagggctggccggaggtcatcctgaaggtgttcaaggtggacgtggcggcggacatg
gagacggtgcacccgcaggcattctgccaccgctgctggatggccgccatgagggggggc
ggcttctgttccttcggcctgacccgggtgcccgaatggcggccgcacacctccggatgt
ctgctctgcttccccaagacgccctcggccttccagcgcaaggggcgcaagcgcgccaaa
gccctccgaagagccccggctctggccaaaagggtgaagcgggaagcccagagcgccgct
gctggcgtcgggggcaagagggtgctgagagccttagtggaccagcagcagcagcagcag
cagcagcagcagcagcagccaccacatgggcctgtgagcaggagcagcagggtgaagccg
ggcgcacagagagccctgtgggtgaagaacatcaccctctgccagagagaccacctgagc
tccaagctgctgcccgacgacctgcccgccgacttcctccgcgccgtcacctgccaggtg
tgcgaccacctgctgagcgaccccgtccagtccccctgccgacacctcttctgccgtggc
tgcatcctcaagtacagccgggcgctgggtgcccagtgcccagtctgcgagctgccctgc
ccggagcccacagagctgaagggcccgcccaaggccttcctggtggtgctgcagtccctg
cccctgctgtgccccagggagggctgtggtgagctggtcaggatggactccttcagggcc
cactgccaaggccacctccatcagaggcagccggacgaagacgacctgctgggcccggat
gtggacagggatctggacggatacttgccggtcaacaagggcgggcgcccacgccagcac
ctgctgtccctcaccaggcgtgcgcagaagcaccggctcaaggagctgaagaaccaggtg
cgggcgttcgccgacaaggaggaaggaggggacaccaagtctgtctgtctgacactcttc
ctgctggctctgagggcggggaacgagcacaaacaggcagatgagctggaggccatgatg
caaggcagggggtatggtttgcatcctgctgtgtgccttgccatcagggtcaacaccttc
ctcagctgcagccagtaccacaagatgtaccgcaccgtcaaggccaccagtgggcgccaa
atcttccagccgctgcataccctgcgcgccgctgagaaggagctgctgccgggcttccac
cccttcgagtggcagccagctctgaaggccgtgtctagtagctgggacgtgggcatcctg
gacgggctctcgggctggatgagctcggtggaggacgtgcctgcagacaccatcgcccgg
cgcttccgctacgacgtggccctggtgtcggcgctcaaggacctggaggaggacctgatg
gagggcctgagggagcagggcctggacgacagctcagtgacgggcttcaacgtcaccatc
aaggagtcatgcgacggcatgggcgacgtgagtgagaagcatggcggtgggccggcgctg
cccgagaaggccgtgcgcttctccttcaccatcatgtcggtgtcggcgcaggtggagccc
gaggacgatgagccagccagctccccggtggtcatcttccacgagatgaagcccaactcg
gagctctcctgcaagccgctgtgcctgatgttcgtggacgagtcggaccacgagacgctc
acggccatcctgggccccgtggtggctgagcgggacgccatgaaggagagccgcctcatc
ctgtcgctgggcggcctgccgcgctctttccgtttccactttcggggcacgggctatgac
gaaaagatggtgcgtgagatggaggggctggaggcgtccggctccacctacatctgcacg
ctgtgcgactccacgcgcgccgaggcctcgcacaacatggtgctgcacaccatcacgcgc
agccaccaggagaacctcgagcgctacgagctgtggcgcaccaaccccttcgccgagtcg
gccgatgagctgcgcgaccgcgtcaagggcgtctcggccaaggccttcatggagacgcag
cccacgctggacgcgctgcactgtgacatcggcaacgccaccgagttctacaagatcttc
caggacgagatcggcgagatgcacgcccgccacggcaactccccaccgccgggccgcgag
gaacgtcggcggtggcgcgcggcgctcgacaagcagctgcgcaagaagctcaagctcaag
ccggtgatgcgcatgaacggcaactacgcgcggcgcctcatgacggctgaagcggtggag
gtggtgtgcgaactggtgccctcggaggatcggcggcagctgctgcgcgagctcgtgggg
ctctatctgcagatgaagcccgtgtggcgctccacctggccagcccgtgagtgcccagtc
cagctgtgccgctacagcttcaactcgcagcgcttcgccgagctgctctccaccgccttc
aagtaccgctacgacggcaagatcaccaactacctgcacaagacactggcgcacgtgccc
gagatcgtggagcgcgacggctccattggcgcctgggccagcgagggcaacgagtccggc
aacaagctcttccgacgcttccgcaaaatgaacgcccggcagtccaagaccttcgagctg
gaagacgtactcaagcaccactggctgtacacatccaagtacctgcagaagtttatggag
gcccataagaactcagccaaggccctgcaggccactataaacccagaggagattgtggac
gacagtgatatgttactggaggttccagacttctaa
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