Alosa sapidissima (American shad): 121724716
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Entry
121724716 CDS
T11137
Symbol
rc3h1b
Name
(RefSeq) roquin-1 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
asad Alosa sapidissima (American shad)
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
asad03000
]
121724716 (rc3h1b)
04121 Ubiquitin system [BR:
asad04121
]
121724716 (rc3h1b)
Transcription factors [BR:
asad03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
121724716 (rc3h1b)
Ubiquitin system [BR:
asad04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
121724716 (rc3h1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
121724716
NCBI-ProteinID:
XP_041967412
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Position
1:26098598..26132076
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AA seq
1089 aa
AA seq
DB search
MPVQAPQWTEFLLCPICTQTFEETVRRPISLGCGHTVCKMCLNKLHRKACPFDQTAINTD
IEQLPVNSALLQLVGGQVPKLQPVALITDPEDTKHYDEARQCVEELALYLKPLSSIRGVG
LSNAAQSMLSRPMQRKLVTLVHCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEGGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLEKGLVAVKTVVHGLVDFIQNHSKKGTDQQQPPQHSKYKTYMCR
DMKQKGGCPRGASCTFAHSQEELEKYRKMNKRLAARLPGPGVLLPEDGVPLEVVTRKPSP
LTNGIVAAGSGAQMPQLVARGADPTYDLLRKPKLDSTSMSAPGSPPDSVASDHLPMPKQM
PVVPRAPQMYPQQQPEMFYPESRAPPSGSQYDAPQYQTGNPYPYQPSPYVQRYIRNPPPP
NESSVPPYPESYPSYVPERPYPAPHSGPAFSQGFPPPPHYDSRRHTPYPGHPPPQSYAPP
RDEMVRMSPVPVDVPQAPMPPPPAGAAGSLYHPDSRERYPPEGYPPHGPHPGHMRSYGRD
PYSRSHQSLDYLHRRRKEIMAQLEERKVISPPPFAASPTLPHTFPNDYPQEYLEENSKAF
GKGREQDYAGQYSPWSCDTIGSYIGSKDAKTKDLMGTGGVEMMNVEGKGLRDPPLEAQRR
SADAKDDDPIIPFGSLPTVSRFGAISRTSKTGYQTTGPVQAMASSQGSGPKHMTTAAEYT
YGNHPAWGGASYPQHQNMTAQGHFNERLPMPPPDREQLKMELQQVNQQISQQTQAASNSL
LLQREASALAAQPAGGKWPAGGAVSSEQLSLELCHVEREIGKRTREIAMENQVAHEYKMK
ASENGQAERKELSLALGEVSNGSSSIVSEASATMLSLTSKTSSLSLCSADPTPASGADHQ
KNGVVHSCS
NT seq
3270 nt
NT seq
+upstream
nt +downstream
nt
atgccagtgcaagccccacaatggacagaatttttgttgtgcccaatatgtacacaaaca
ttcgaagagactgtgcggaggcccatcagcctgggctgtggccacactgtctgcaagatg
tgcctgaacaagctgcaccgaaaagcctgtcccttcgatcagactgctatcaatacagac
atcgagcagctgccagtcaactcggcccttcttcaactggtggggggtcaggtgccaaaa
ctgcagcccgtggcccttattactgacccagaagacaccaagcactatgatgaggctcgc
caatgcgttgaggaactggccctctacctcaaacccctcagcagcatcagaggggtgggt
ctcagtaatgcagcccagagcatgcttagccggcccatgcagcggaagctggtgaccctg
gtgcactgtcaactggtggaggaggagggccgagtcagggccatgcgagcagcccgttct
ctgggggagaggactgtaacggagctcatactccagcaccagaacccccagcagctctct
tccaacctctgggctgctgtgcgtgcccgtggctgtcagttcctgggcccagccatgcaa
gaggaagccctgaagctagttctattggcgctagaggatggttcagccctttccaggaaa
gttctggttctgtttgtggtccagagactggagccccgattcccccaggcctcaaagacc
agcatcggtcatgtggttcagctgctctacagagcttcctgctttaaggttacaaagcgt
gatgaggactcgtcgctaatgcagttgaaagaggagttccgcacgtacgaggcgctgcgt
cgtgagcacgactctcagattgtgcagatcgccatggagggggggctgcgcatcgcccct
gaccagtggtcctctttgctctatggggaccagtcccacaagtcccacatgcagtccatc
atcgacaagttgcagacaccagcgtcgtttgctcagagtgtgcaggagctgaccatcgct
ctccagaggacgggcgacccggccaaccttaaccggctcagacctcatctggagctgttg
gccaatattgaccccagtccagatgccccaccacccacctgggagcagctggaaaagggc
ctggttgctgtgaagacagtcgtgcacggcctggtggacttcatccagaatcacagcaag
aagggaacggatcagcaacagcccccacagcacagcaagtataagacgtacatgtgccgt
gacatgaagcagaaagggggctgtcccaggggagccagctgcaccttcgcccactcacag
gaggagttggagaagtaccggaagatgaacaagcgcttggcagctcgtctcccgggcccg
ggtgtgttgttaccagaggatggggtgcccctggaggtggtgacccgcaaaccttcccct
ctcaccaacggcattgttgccgccggctctggagcgcagatgccacagctagtcgcccgc
ggcgctgaccccacctatgacctcctgcggaagcccaaactggactccacgagcatgagc
gccccaggctccccaccggactcggtggcatcagatcacctccccatgcccaagcagatg
ccggtggtgcctagagccccacagatgtatccccagcagcagccagagatgttttaccca
gagagcagagctccaccatcaggctctcagtatgacgcccctcagtaccaaacaggcaac
ccttacccctaccaaccctctccgtatgtccagaggtacatccgaaacccaccgcctccc
aacgagtcctctgtgcccccctatccggagtcgtaccccagctacgttcccgaacgtccg
tatcctgctccccattcggggcctgccttctcccaagggttcccacctccaccccactac
gacagccgccgacacacaccctaccctggacaccctcctccccagtcctatgcccctccc
cgggatgagatggtcaggatgagccctgtgcccgtggatgtgccccaggcacccatgccc
ccacctcctgcgggtgccgctggttccctctaccaccctgactctcgggaaagatatcct
ccggaggggtaccctccccatggaccccaccccggccatatgaggtcttatgggagggac
ccttatagccgctcccaccaaagcctagactacttacaccgccgacgcaaggagatcatg
gctcagctggaggagaggaaggtcatctctcccccgccctttgccgcctctcccacactt
ccccacacctttcctaacgactacccacaggagtatcttgaagagaactccaaagccttt
ggaaagggccgtgagcaagattatgcagggcagtattcgccctggtcgtgtgacaccatc
ggatcttacatcggcagcaaggatgccaagactaaagacctcatgggcacaggtggcgtg
gagatgatgaatgtggaagggaaaggtctgcgagaccctcccttggaagctcagcgccgc
tctgcagacgccaaagacgacgatcccatcatcccctttggctcattgcccaccgtctcg
cgctttggcgcaatttcacgcacctctaaaacgggctaccagaccaccggccccgtgcaa
gccatggcatcatcacaaggatcgggacccaagcacatgaccacagcagctgagtacacc
tacgggaaccaccctgcctggggtggagcatcctaccctcaacaccagaacatgactgct
cagggacacttcaatgaacgcctgcccatgccccctcctgacagagagcagctaaagatg
gagcttcaacaggtcaaccagcagatcagtcagcagacacaggctgccagtaactctctg
cttctgcagagggaggccagcgctctggctgctcagcctgcgggaggcaagtggccagca
ggaggcgctgtgtccagtgagcagctcagtctggagctctgccatgtggagcgagagatt
ggcaagaggacccgagagatcgccatggagaatcaggtggctcacgagtacaaaatgaag
gccagtgagaatggccaggcagagcgtaaggagctgtcccttgccctgggtgaggtttca
aatggatccagcagcattgtgtcggaggccagtgccaccatgctgtccctgaccagtaaa
acgtcatcgctcagtctgtgctctgctgaccccaccccagccagcggggcagaccaccag
aagaatggtgtggtccactcctgctcgtag
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