Alosa sapidissima (American shad): 121724749
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Entry
121724749 CDS
T11137
Symbol
rfc4
Name
(RefSeq) LOW QUALITY PROTEIN: replication factor C subunit 4
KO
K10755
replication factor C subunit 2/4
Organism
asad Alosa sapidissima (American shad)
Pathway
asad03030
DNA replication
asad03410
Base excision repair
asad03420
Nucleotide excision repair
asad03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
121724749 (rfc4)
03410 Base excision repair
121724749 (rfc4)
03420 Nucleotide excision repair
121724749 (rfc4)
03430 Mismatch repair
121724749 (rfc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
asad03032
]
121724749 (rfc4)
03036 Chromosome and associated proteins [BR:
asad03036
]
121724749 (rfc4)
03400 DNA repair and recombination proteins [BR:
asad03400
]
121724749 (rfc4)
DNA replication proteins [BR:
asad03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
121724749 (rfc4)
DNA Replication Termination Factors
ELG1-RFC complex
121724749 (rfc4)
Chromosome and associated proteins [BR:
asad03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
121724749 (rfc4)
DNA repair and recombination proteins [BR:
asad03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
121724749 (rfc4)
Check point factors
HRAD17(Rad24)-RFC complex
121724749 (rfc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
RCF1-5-like_lid
Rad17
AAA_16
AAA_assoc_2
AAA_22
AAA_11
Mg_chelatase
AAA_30
ResIII
AAA_5
DUF815
RuvB_N
SLFN-g3_helicase
AAA_24
AAA_14
AAA_19
AAA_28
AAA_7
DUF5338
Gp44_lid
AAA_3
Motif
Other DBs
NCBI-GeneID:
121724749
NCBI-ProteinID:
XP_041967435
LinkDB
All DBs
Position
12:6162154..6168945
Genome browser
AA seq
357 aa
AA seq
DB search
MQAFLKGTSSQSIKPLKDKAAGSSGEKKPKALPWVEKYRPKSVDEVAYQEEVVAVLKKSL
EGADLPNLLFYGPPGTGKTSTILAAARELYGPELFRQRVLELNASDEXGIQVVREKVKRF
SQLTAAGSRSDGKPCPPFKIIILDEADSMTNAAQAALRRTMEKEARTTRFCLICNYVSRI
IEPLTSRCSKFRFKPLANAIQEERILEICKKENLNYSKQGIDELVRVSEGDLRKAITYLQ
CAARLNGDTEITESTILEIAGVVPPNVIDNLLQICHKGTFDKMQIEVKNMIDDGYAATQI
LNQLHDRIIEGHLSDKQKSVIAEKMAEVDKCLADGADEYLQLISLAAVIMQQATQNS
NT seq
1074 nt
NT seq
+upstream
nt +downstream
nt
atgcaggcgtttctgaaaggaacatccagccagagcatcaagcctctgaaggacaaagca
gctggatcgagtggagagaagaaacccaaggctctaccatgggtagagaaatacagacca
aagagtgtggatgaggtggcctatcaagaggaggtggttgctgttttgaagaaatcacta
gagggcgctgatttgcccaacttattgttctatgggcctccgggtacaggaaagacctcc
accatcttggcagcagctagagagctctatgggcctgagctcttccgacagcgcgttttg
gagctcaatgcctctgacgaanncggaatccaagtggtccgagagaaagtgaagagattt
tcccagctaactgcagcaggctctcgatctgatgggaagccatgccctccctttaagatc
atcattcttgacgaggcggactccatgaccaacgcagcgcaggcggctctcagacgcacc
atggagaaggaggcacgcaccacccgcttctgcctcatctgcaactacgtcagcaggatc
atcgaaccgctgacttccagatgttccaagttccgtttcaagcctcttgcaaatgccatc
caggaggagagaatcttagaaatctgcaagaaggaaaacctaaactattcaaaacagggc
attgatgagctggtgagagtgtcagagggagacctgcgcaaagccataacttatttacaa
tgtgcagccaggcttaatggagatacagagatcacagagagtaccatattagagatcgct
ggggtggtgccccctaatgtcatagacaatctgcttcagatctgtcacaaaggcaccttt
gataaaatgcagatagaagtcaagaatatgattgatgatggctatgctgctacacagatt
cttaaccagctacatgatcgcatcatcgaaggccacctcagtgacaagcagaaatcagtc
attgctgaaaaaatggcggaggttgacaagtgtctggctgatggagctgatgaatacctg
cagttgattagtctggccgcagtgataatgcagcaagcaactcagaactcctga
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