Alosa sapidissima (American shad): 121724762
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Entry
121724762 CDS
T11137
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
asad Alosa sapidissima (American shad)
Pathway
asad03013
Nucleocytoplasmic transport
asad03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121724762
03015 mRNA surveillance pathway
121724762
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asad03019
]
121724762
Enzymes [BR:
asad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
121724762
5.6.2.5 RNA 5'-3' helicase
121724762
Messenger RNA biogenesis [BR:
asad03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
121724762
mRNA cycle factors
Common to processing body (P body) and stress granule
121724762
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
DEAD
nSTAND3
NAT10_TcmA_helicase
UvrD-helicase
SRP54
AAA_16
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
121724762
NCBI-ProteinID:
XP_041967463
LinkDB
All DBs
Position
12:34955380..34975060
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AA seq
1102 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEETELLGADTQGSEYEFTDFTLPSQTQTQGQTQSQLDNQVNG
PDEVLQNGPLDDSVAKTSQLLAELNFEEDEEDAYYTKDLPLHACSYCGIHDPACVVYCNT
SKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA
KADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEHEQLRARQIAA
QQINKLEELWKDNPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK
LKESQTQDNITVRWDLGLNKKRIAYFSLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIG
HVIKVPDNYGDEIAIELRSSAGAPIEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETSVS
GYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGK
TVTSATIVYHLARQNNGPVLVCAPSNIAVDQLTEKIHHTGLKVVRLCAKSREAIDSPVSF
LALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICGTCV
GAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKA
GLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAGDRVKKGFDFQ
WPQPDKPMFFYVTQGQEEIASSGTSYLNRTEASNVEKITTRLLKAGAKPDQIGVITPYEG
QRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRR
LNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRK
LVNTINPGARFMTTAMYDAREAMIPGSVYDRSSTGRPSNMYFQTHDQIGMIGAGPNHVAA
MNIPIPFNLMMPPMPPPAYLGQANGPAPGRGGLNKGRGGRGGRQKTRGGATHGGGPGTMG
NSQASQDVASQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALS
QDSTYQGERAYQHGGVTGLSQY
NT seq
3309 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaagcgtatgggccgagttctcagactctaaccttcctggataccgaggaa
actgagttgctcggagctgacactcaaggctctgaatatgaattcactgattttacattg
cctagtcaaacgcaaactcaaggccaaactcagagtcagctggataatcaggtaaatggc
cccgacgaagttttacagaatggaccacttgatgactctgttgctaaaacaagtcaactt
ttagcggaactgaactttgaagaagatgaggaggatgcctattacaccaaggatctcccg
ctgcatgcctgcagctactgcggtatccatgatccagcatgtgttgtgtactgcaacacg
agcaagaagtggttctgcaatgggagaggcaacacctctggaagccacattgtaaatcac
ttggtgagagccaagtgtaaggaggtgactctccacaaggatgggcccctgggagagaca
gtgctagagtgctataactgcggctgccgcaacgtcttcctcctcggcttcatcccagcc
aaggccgactccgtggtcgtgctcctgtgcaggcagccgtgtgccagtcagagcagcctg
aaggacatcaactgggacagctctcagtggcagccgctgatccaggaccgctgcttcctg
tcctggctggtgaagatcccctccgagcacgagcagctccgcgctcgccagatcgccgcc
cagcagatcaacaagctggaggagctctggaaggacaaccccacggcgaccctggaggac
ctggagaagcccggagtggacgaggagccgcagcacgtgctgctgcgctacgaggacgcc
taccagtaccagaacatctttgggcctttggtcaagctggaggccgactatgacaagaag
ctcaaagagtcccagacccaagacaatataactgtcaggtgggacctgggactgaataaa
aagcggattgcttatttctcattacccaagacggattcaggtgatatgcggctgatgcag
ggagatgagatctgtctcaggtataaaggtgatctggctccgctgtggaaagggatcgga
cacgtcatcaaagtaccagacaattatggagatgagattgcaattgaattgcgaagcagc
gctggagcacccattgaggtcacacacaacttccaggtggattttgtgtggaagtccacc
tcctttgatcgaatgcagagtgccctgaagacctttgccgtggacgagacctccgtgtcc
ggctacatctaccacaagctcctgggccacgaggtggaggatgtcatcatcaagtgccag
ctgcccaagcgtttcactgcccagggcctccctgacctgaaccactctcaggtgtatgcg
gtgaagactgttctccagcgtcctctgagcctcattcaggggccacctggaacgggcaaa
acggtcacctcggcaaccatagtgtatcacctggccaggcagaacaatgggcctgtgctg
gtgtgtgctcccagcaacatcgcggtggaccagctgacggagaagatccaccatacaggc
ctgaaggtggtcaggctgtgtgccaagagcagggaggccatcgactcacccgtctccttc
ttggccctgcacaaccagatccgcaacatggacagcatgccagagctgcagaagctgcag
cagctgaaggacgagacgggcgagctgtcgtctgcggacgagaagcgctaccgggcactg
aagcgcaccgccgagagagagctgctcatgaatgctgatgttatctgcggcacgtgtgtc
ggcgcgggagacccgcgtctggccaagatgcagttccgctccatcctgatcgacgagagc
acgcaggcgacagagcccgagtgcatggtgcccgtggtgctcggagccaagcagctgata
ctggtgggcgaccactgccagctgggccctgtggtcatgtgtaagaaggcggccaaggcg
gggctgtcccagtccctgtttgagcggctggtggtgctggggatccggcccatccgcctg
caggtgcagtaccgcatgcaccctgccctcagtgccttcccctccaacatcttctacgag
ggctcgctgcagaacggggtcaccgcaggtgaccgtgtgaagaaaggctttgacttccag
tggcctcagccggacaagcccatgttcttctacgtgacccagggccaagaggagatcgcc
agctccggcacctcctacctgaacaggaccgaggcgtccaatgtggagaagatcaccaca
cgtctcctgaaggcaggcgccaagcccgatcagatcggcgtcatcactccctacgagggt
cagaggtcgtacctggtgcagtacatgcagtttagtggctccctccacaccaagctctac
caggaggtggagattgctagtgtggacgccttccagggccgggagaaggacttcatcatt
ctgtcctgtgtgcgagctaacgaacaccagggcatcggcttcctgaacgacccccgccgt
ctgaacgttgctctcaccagagcaaggtatggcgtgattatcgtgggcaaccccaaggcc
ctgtccaagcagcctctgtggaaccacctgctgaactactacaaggagcagaaggtgttg
gtggaggggcctctcaacaacctccgcgagagcctcatgcagttcagcaagccccgcaag
ctggtcaacaccatcaaccctggagcgcgcttcatgaccacggccatgtacgacgccaga
gaggccatgatcccgggatctgtgtatgaccgcagcagcacaggtcgtccatccaacatg
tacttccagacccatgatcagattggcatgattggcgcagggcccaaccacgtggcagcc
atgaacatccccatccccttcaacctgatgatgcccccgatgcccccaccagcctacctg
ggccaggccaacggccccgcgcctgggcgcggaggtctgaataagggcagaggagggcgc
ggcgggcgccagaagacccgtggaggtgccacccacgggggcggcccgggcaccatgggc
aacagccaggccagccaggacgtggcgtcccagcccttctcccaggggcccctgacgcag
ggctacatctccatgagccagccctcacagatgagccagcctggcctctcccagccagaa
ctctcacaggacagttacttgggggatgagttcaagtcccagatcgacgtggcgctgtcc
caggactctacctaccagggagaacgcgcataccaacatggcggagttactggactgtca
cagtattaa
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