Alosa sapidissima (American shad): 121724825
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Entry
121724825 CDS
T11137
Symbol
hnrnpm
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein M isoform X1
KO
K12887
heterogeneous nuclear ribonucleoprotein M
Organism
asad Alosa sapidissima (American shad)
Pathway
asad03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121724825 (hnrnpm)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
asad03041
]
121724825 (hnrnpm)
Spliceosome [BR:
asad03041
]
Common components
Common spliceosomal components
hnRNP proteins
121724825 (hnrnpm)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_3
RRM_MARF1
RBD_DEAH11
HnRNP_M_NLS
DUF7552
Motif
Other DBs
NCBI-GeneID:
121724825
NCBI-ProteinID:
XP_041967588
LinkDB
All DBs
Position
12:complement(25590438..25597963)
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AA seq
688 aa
AA seq
DB search
MSTEAAPEKPGQGEVNGKANHESRKERPQKRGGGGGRFEPYGNPSKRYRVFVSNIPYDVK
WQSLKDLMKEKVGEVTYVEHLMDAEGKSRGCAIVEFRTEELMKKAVEKVNKHNLNGRPLK
VKEDPDGMIAQREAHRSQGGGGGGPPGGMGGNMGGNMGGNMGGNMGGGMGMGMGPGPGAP
PMVNIPPSLLNNPNIPNEIIHGLQSGKIGSTVFVANLDYKVGWKKLKEVFGMAGVVVRAD
ILEDKDGKSRGMGTVTFDMPIEAVQAVSMFNGQLLFNRVMHVKLDEKSLPKGDFAPPDRP
PALPRGLSGIGLGLGPGGQPIDATQLNRGGGGGGGGGGGGGGMGNMGPGGMDGMGFGGGM
GRMGGGMDNFGGMNNMDRFGPSGMGRMNDMDRIGGAFDREFGRNDMAMSRNNFGDSFDRG
MGNSMGMDRMGSGMDRMGSGMDRMGSGMDRMGMDRMDRVSDLDRLGTGFDRMGSGLDRLG
PSMDRLGTGLDRMSSSVDRLGPAGFDRLGPSSLERMSAGMDFNSPMGGMDRMNTGIDRMG
TNFDRMGSAGIDRFPATGLDRMGSNMDRMGSAGVGGQFDRPADMDRGNFNNPFGGAGAGG
PGAGVNARKGCQIFVRNLPFDFTWKMLKDTFNSCGIVQYADIKMENGKSKGCGVVRFDNP
ETAERACRTMNGYRLNGREIDVRIDRNA
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atgtcgactgaggccgcacctgagaaaccaggccagggtgaggtgaatggcaaggccaac
cacgaatccaggaaagagaggccccagaagcgcggtggaggtggcggccgcttcgagccc
tatggaaacccctccaagagatacagagtctttgtcagcaatatcccatacgacgtgaaa
tggcaatctctgaaagacctcatgaaggagaaagtgggtgaggttacgtacgtggagcac
ttaatggacgcagaaggcaaatcaagggggtgtgcaattgttgagttcaggactgaagag
ctcatgaagaaagctgtggagaaggtgaacaagcacaatctcaatgggcgtcctcttaaa
gtcaaggaagacccagatggcatgattgcccagcgggaggcccacaggtctcagggaggc
ggtggcggtggtcccccgggtggcatgggtggcaatatgggtggtaacatgggcggcaat
atgggtggcaacatgggaggtggtatgggcatgggaatgggacctggtccaggggcccca
cctatggtcaacattccccccagcctactgaacaaccccaacattcccaatgagatcatc
catgggctgcagtctgggaaaatcggaagcaccgtgtttgtggcgaatctggattataag
gtgggctggaaaaaactgaaggaggtgtttggcatggcaggtgttgtagtccgtgctgat
atccttgaagacaaggacgggaagagcaggggaatgggaactgttacctttgacatgcca
attgaagccgtgcaagcagtctctatgttcaatggacaactcctcttcaaccgtgttatg
catgtgaaactggatgagaagtctctgccaaaaggagactttgcaccaccagacagacca
ccagccctcccacgtggcttgagtggaattgggcttggacttggaccaggtgggcagccc
attgatgccactcagctcaaccgtggtggcggcggcggtggtggtggtggtggcggcggt
ggcggtatgggtaacatgggccctggaggaatggatggaatgggctttggaggaggcatg
ggtcgtatgggaggaggtatggacaactttggtggaatgaacaacatggatcgcttcgga
ccctctggaatgggaagaatgaatgacatggatcgtattggtggcgcctttgaccgagag
tttggtcgcaatgacatggccatgtctcgcaataactttggagactcttttgacagagga
atgggcaactccatgggcatggaccgcatgggctctgggatggacagaatgggttctggg
atggaccgcatgggctctgggatggaccgcatgggaatggatcgtatggaccgcgtctct
gatctggacaggctgggtactggctttgaccggatgggttctggtctggaccggctgggg
ccaagtatggacaggctgggtaccggcctggaccgtatgagctccagcgtggaccgactg
ggccctgctggctttgaccgcctgggcccgtccagtttagagcgcatgagtgcagggatg
gacttcaactcccccatgggtggtatggataggatgaacactggcatagaccgcatgggc
accaacttcgaccgcatgggttctgctggtattgaccgcttcccggccactgggctggac
cgcatgggctccaacatggaccgcatggggtcagccggagtgggaggccagtttgaccga
ccggccgacatggaccgcggcaacttcaacaaccccttcggtggagcaggtgctggtggt
cctggagccggtgtcaatgccaggaagggctgccagatctttgtcagaaatctgccattc
gactttacctggaagatgctgaaagacaccttcaattcttgtggtattgtgcagtatgct
gatatcaagatggagaacgggaaatccaaagggtgtggcgtagttcgttttgacaaccct
gagaccgccgagcgggcatgccgcaccatgaacggttacaggctgaatgggagagaaatc
gacgtcaggatcgacagaaatgcataa
DBGET
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