Alosa sapidissima (American shad): 121724834
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Entry
121724834 CDS
T11137
Name
(RefSeq) retinal-specific phospholipid-transporting ATPase ABCA4-like isoform X1
KO
K05644
ATP-binding cassette, subfamily A (ABC1), member 4
Organism
asad Alosa sapidissima (American shad)
Pathway
asad02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
121724834
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
asad02000
]
121724834
Transporters [BR:
asad02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
121724834
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GFIT
Other DBs
NCBI-GeneID:
121724834
NCBI-ProteinID:
XP_041967616
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Position
12:complement(31913068..31967543)
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AA seq
2321 aa
AA seq
DB search
MTVGSQIRLLLWKNWTLRKRQKIRFVVEILWPVILFIGLVWLRKANPLYRQHECHFPSKA
MPSTGILPWIQGIFCNADNPCFRHTTRGETPGVVSNYNNSVLARFYADSQKLLLNDPEFQ
QLGQLWGELSAMSDFMDTLRSHPERVAGRGLKIEDILKDDETLTSFLLRDAGLSDSVVNQ
LINALVKVEQFAYGVPDLTLKQIACSQELLERFIIFPSRRGLYGVRNAMCALSQVRLQKI
EDSLYANVDFFKIFRLLPTVLDDGTTGLDMAHWGVVLSSVSDKVQELAQRSSSQDLLKVL
SPLFQSEGPASFGQLMRIVSDLFCGYPEGAGSRVMSFNWYEDNNYKVFLGVNNSRSHDNY
VYDDSSTPFCNSLMQTLESNPITKIVWSSAKPLLMGKILYAPDSPAVRRILKSANTTFEE
LERLMIMGRAWEEVGPQLWNFFQDSVQMNMIRDTLRNPTVMDFLDRRLAETELTTRHILN
FLFNGPEYKREAGMPSVDWRSVFNLADQFVRTFNQYAQCIKLDKFEGLEDEEEVAHKALY
LLEENKFWAGLVFLDMYPWTDALPPHIRFKIRMDIDAVERTNKIKDRYWDPGPRASALED
LRYIWGGFAYLQDMVEHGILKLQTGHDWPLGVYMQQMPYPCYVDDLFMITLNRCFPIFMV
LAWIYSVSMTVKSIVLEKELRLKETLKAMGVTNGVLWYTWFIDSFLMMTASTALLTWIIV
AGKVLNYSNPIVLFLFLLTFTLATVMQCFLMSVFFNKANLAAACSGIIYFTLYLPHILCF
AWQDRITKEMKMGASLLSQVAFGFGTEYLSRYEEQGLGLQWDNIRTSPLDGDKYSFMTSI
SMMALDALIYGILAWYLDNVFPGQYGIGRPFYFPLQPSYWRTSESSKPEDEMPMMESFGR
PDDVENVRSPSPADCNGSGSRKQCKHQEKRERMERERGGQQHKQDDQEGDNQPQEPVTFF
ESDPLGLPMGVCVEDLVKVYPGSPRAAVDCLNITFFEGQITSFLGHNGAGKTTTMSILTG
LFPPTSGTAYINGKDIRTDMDTIRQSMGMCPQYNILFNHLTVEEHIFFYARMKGRPAAEA
QQEVESMLEDLGLPHKRHDQAQNLSGGMQRKLSVAMAFVGGSKVVILDEPTSGVDPYSRR
SIWDLLLKYRSGRTVILSTHHMDEADLLSDRVAIISKGKLHCSGSPLFLKNCFGVGFYLT
LVRRVKEPQTRKENGCDCASECSCTCSTCTRHKEESTGHSQHLERALDGDVDSITSLILH
HVPEAKLIEMVGQELTYLLPNKGFKQRAYASLFRELEEMLADMGLSSFGISDTSLEEIFL
KVTADSEGANAPVAAERFVLERRRNAGGLLKEREGEEVADDEGVDANGQPHAAETDSNAG
RGSRQVKGPSLIIKQFHALLVKRLHHSTRSYKDFLAQIILPATFVLVALIFTTIVPPFGE
HPSLTLTPWMYGPQITFFSNERPTHPKMTHFVQVLMSPPGMGTRCMVDEPLGNLTCSNLT
TEWAVPSVDPVVSNILMSPEWNALNPSPTCQCSTNKKLTMLPICPIGAGGLPPRQRIERS
GDTMLDLTNRNISDFLVKTYPTLIRTSLKSKYWVNEQRYGGISVGGKLPILNVDPRTIQN
VFNQLSRMMNVTGGDYTKLALRDFGTFLRYMESEYNVKVWYNNKGWHAMVSFLNVANNAI
MRAHLPFHANPNAYGITTINHPLNLTKDQLSEVTVLKTSVDAVVAICVIFAMSFIPASFI
LYLIQERVTKAKHLQFVSGVSPLVYWVANFFWDMINYSVSTAIVVGIFVAFDKKCYTSPS
NLPALVALLLLYGWSVTPMMYPVSYLFSVPSTAYVSLSCINLFIGINSSAVTFILELFEN
NQPLLAFNEVLKKVLLVFPHFCLGRGLIDMAMNHAVTEVYARFGEDYSMDPFKWDFVGKN
LCFMAVEGFVYFLLNILIQYRFFLNHWLSDAKGPPVKDEDEDVARERQRIQAGGSKNDIL
FIRDLCKTYVGRKRPAVDRICVGVPAGECFGLLGVNGAGKTTTFKMLTGDTDVSSGDAAV
TGYSILSNILDVHQNMGYCPQFDAIDDLLTGREHLFLYARLRGVPEGEINRVAEWGIQKL
GLSEYAERCAGTYSGGNKRKLSTAIAMIGCPSLVLLDEPTTGMDPHSRRFLWTAILSVIR
DGRAVVLTSHSMEECEALCTRLAIMVNGTFKCLGSIQHLKYKFGDGYVVTLKVRAAKPGT
PPDLALAEAFIESSFPGCVQREKHYNTLQYQITSSSLARIFQLVLSNKERLHIEDYSVSQ
TTLDQVFVNFAKQQAGEDEDQRPQPRRVKKIAPLRGFGRKK
NT seq
6966 nt
NT seq
+upstream
nt +downstream
nt
atgactgtcggcagccagatacgccttttgttatggaagaactggacactccggaaacgt
caaaagatccgctttgtggtggagatcctatggccagttattttgttcattggtctggtt
tggctgaggaaagcaaaccccttgtaccgccaacatgaatgtcattttccaagcaaggcc
atgccctccactggaatcctgccgtggattcagggcattttttgcaatgcagacaaccca
tgcttccgacacactacacgtggagaaactcctggtgtggtgtctaactacaacaactct
gttctggctcggttctacgccgactcacaaaagctgctcctgaatgacccagagttccaa
cagctgggccaactgtggggagagctgtctgccatgagtgacttcatggacacactgcgc
agccatccagagcgtgtggcaggccgcgggctgaagattgaggatatcctgaaggacgat
gaaaccctcacgtcttttcttctgcgagatgctggactctctgactcagtcgtgaaccag
ctgatcaatgccctagtcaaagtggaacagtttgcgtatggtgtgccggacctgactctg
aagcagatcgcctgtagccaggagctgttggagcgcttcatcatcttcccgagccgccgc
ggtctctacggtgtccgcaacgccatgtgtgccctctcacaggtccgcttgcagaagatc
gaggactccctctatgccaacgtggacttcttcaagatctttcgtttgcttccaactgtc
ctggacgatggcaccactgggctggacatggctcactggggtgttgtgctgtcctccgta
tccgacaaggttcaagagctggctcagagaagtagttcccaggacctcctgaaggtgctg
tccccgctcttccagtcggagggtccggcctccttcggccaactgatgcggatcgtgtcg
gacctgttctgcggataccctgagggagcaggcagccgcgtaatgtctttcaactggtac
gaggacaacaactacaaggtcttcttgggcgtcaacaactccaggagtcacgacaactat
gtctacgatgacagctccactcccttctgcaacagtctgatgcagaccctggagtctaac
cccatcactaagattgtgtggagttcagccaagccgctgctgatgggaaagattctctat
gccccggactctcctgctgtgcgcaggatcctgaagagtgccaatacaacctttgaggaa
ctggaacggctgatgatcatgggccgggcttgggaggaagtagggccgcaactatggaac
ttcttccaggacagcgtccagatgaacatgatccgtgacactctcagaaaccccacagtc
atggacttcctggaccgtcgcctggctgagacggagctgaccactcgacacatcctcaac
ttcctgttcaatggtccggagtataagcgtgaggctggaatgcccagtgtggactggagg
agcgttttcaacctggcggatcagttcgtacgcaccttcaaccagtacgctcagtgcata
aaactggacaagtttgagggcctagaggatgaggaggaggtggcccacaaagccctctac
ctgctggaggagaacaagttctgggccggcctcgttttcctggacatgtacccctggacc
gacgcactgcctccccatatccgcttcaagatccgcatggacatcgacgccgtggagcgg
accaacaagatcaaggacaggtactgggacccaggtcctcgtgcctctgctttggaagac
ctgcgctacatctggggggggtttgcctacctgcaggacatggtggagcacggcatcctg
aagctgcagaccggccacgactggcctctgggggtctacatgcagcagatgccatacccc
tgctacgtggacgatctgttcatgatcacgctgaaccgctgcttccccatcttcatggtg
ctggcctggatctactctgtgtccatgacggtcaagagcatcgtgctggagaaggagctg
cgtctcaaagagacgctcaaggccatgggcgtgactaacggcgtgctgtggtacacctgg
ttcatcgacagcttcctcatgatgaccgccagcaccgcactgctcacctggatcatcgtg
gctggtaaagttctaaactacagcaaccccatcgtcctcttcctgttcctgttgaccttc
accctggcgaccgtcatgcagtgcttcctgatgagcgtcttcttcaacaaggccaacctg
gcggcggcgtgcagcggcatcatctacttcacgctctacctgccgcacatcctctgcttc
gcctggcaggaccgcatcaccaaggagatgaagatgggcgccagtttactctcccaggtg
gcgtttggctttgggacggagtatctgtcccggtacgaggagcagggcctgggtctgcag
tgggacaacatccgcaccagcccgctggatggagacaagtactccttcatgacctccatc
agcatgatggccctggacgccctcatctacggcatcctggcctggtacctggacaatgtc
ttcccaggtcaatatggaatcggtcggccgttctacttccccctgcaaccatcatactgg
agaacgtctgagtcgtccaaacctgaggatgagatgccgatgatggagagctttgggcgt
ccagacgacgtggagaacgtgcgctcgccctccccggcggactgcaacggctcgggctcc
aggaagcagtgcaagcaccaggagaagcgcgagaggatggagagggagcggggcggccag
cagcacaagcaggacgaccaggaaggggacaaccagccccaggagccagtcaccttcttc
gagtccgatcccctggggctgcccatgggcgtgtgtgtggaggacctggtcaaggtgtac
cctgggagcccccgggcggccgtagactgtctcaacatcaccttcttcgagggccagatc
acctctttccttggacacaatggggctggaaagaccactaccatgtctattctgactggg
ctgttcccacccacctctggcaccgcctacatcaacggcaaggacatccgcacagatatg
gacaccatccggcagtcaatgggaatgtgccctcagtataacatcctcttcaaccatctg
acggtggaggagcacatcttcttctacgccaggatgaagggccgccctgcggccgaggca
cagcaggaagtggagtccatgctggaggatctggggctgcctcacaagcgtcacgaccag
gcacagaacctgtcaggaggcatgcagaggaagctgtctgttgctatggcatttgttgga
gggtcaaaggttgtgattttagatgagccaacgtcaggtgttgacccctactccaggaga
tccatctgggacttgcttctcaagtatcgctcaggtcggacagtgattctgtccacccac
cacatggacgaggctgatctcttgagtgaccgcgtggccatcatctccaagggcaagctt
cactgctccggctctccactcttcctgaagaactgcttcggcgtgggcttctacctgacc
ctagtgcgccgtgtgaaggagccgcagaccaggaaggagaatggctgcgactgtgcctcg
gagtgctcctgcacatgctccacctgcacccgccacaaagaggagagcacgggccactcc
cagcacctggagagagctctggacggtgatgtggacagcatcactagcctgatcctccac
cacgtccccgaggccaagctcatcgagatggtgggccaggagctgacctacctgctgccc
aacaagggcttcaagcagcgcgcgtacgccagcctgttccgagagctggaggagatgctg
gccgacatggggcttagcagctttggcatctcggacacttcactggaggagattttcctt
aaggtcactgcagatagtgagggagccaatgcccctgtcgctgcagagcggtttgttctg
gaacgccggaggaatgccggtggcctcctgaaagagagggagggagaggaggtggcagac
gatgaaggtgtagatgccaatgggcagcctcatgcagcagagacggacagcaatgctggc
cgggggtccaggcaggtgaagggcccgagcctcatcatcaagcagttccacgccctgctg
gtcaagcgcctccaccattccacacgcagctacaaggacttcctcgcccagattattttg
ccagcgacgtttgtgctggtggctttgatcttcaccacgattgtccctccatttggggag
caccccagcctgaccctcacaccctggatgtatggaccgcaaatcaccttcttcagtaac
gagaggccaactcatcccaaaatgactcactttgttcaagtgctcatgagcccacctggc
atggggacacggtgcatggtggatgagccgctggggaacctcacctgtagcaacttaacc
acggagtgggccgtcccctccgtggacccagtggtcagcaacatcctcatgagcccagag
tggaacgcactaaacccctcccccacctgtcagtgcagcaccaataagaagttgaccatg
ctacccatctgtccaataggagccggaggactgcccccacggcagagaatcgagcgctca
ggggacaccatgttggatctgaccaacaggaacatctcagatttcctggttaagacatac
cctactctcatccgcaccagcttgaagagcaagtattgggtgaacgaacagaggtacggt
gggatctctgttggagggaagctgcccatcctcaatgtggaccccagaaccatccagaac
gtcttcaaccagctcagccgcatgatgaatgtcacggggggtgactacacaaagctcgcc
ctgagagactttggcacatttctcagatacatggagagtgaatataatgtgaaggtgtgg
tacaacaacaaagggtggcacgccatggtgtctttcctgaacgtggccaacaacgccatc
atgagggctcacctgcccttccacgctaaccccaacgcttacggcatcaccaccatcaac
cacccactcaacctcaccaaagaccagctgtcagaggtcactgtcctgaagacttctgtg
gatgccgtggtggccatctgtgtgatcttcgctatgtccttcatcccggccagtttcatc
ctctacctcattcaggagcgggtcacaaaagccaagcacctgcagtttgtcagcggtgtc
agcccattggtctactgggtggccaacttcttctgggatatgattaactactcagtcagc
actgctatagtggtgggcatctttgtggcgtttgacaagaagtgctacacatcacctagc
aaccttccagccctagtggctcttctccttctgtatgggtggtcggtgactccgatgatg
taccctgtgtcgtacctgttcagcgttcccagcacggcctatgtgtctctctcctgcatc
aacctcttcatcggcatcaacagcagcgctgttacctttattctggagctgtttgagaat
aaccagccgctgttggcgtttaatgaggtcctgaagaaggttctgctggtgttcccccac
ttctgcctgggcagagggctcatagatatggccatgaaccacgcagtcactgaggtctac
gcacgctttggggaggactacagtatggatccgttcaagtgggactttgttggaaagaat
ctgtgtttcatggctgtggaggggtttgtgtatttcctcctcaacattctcatccaatac
cgattcttcctgaatcactggttgtcggacgccaaggggcctccagtgaaggacgaggat
gaggacgtggccagagagcggcagcgcattcaagcgggcggcagcaagaacgacatcctg
ttcatccgcgacctgtgcaagacatatgtcggtaggaaaaggccggctgtggacaggatc
tgtgtcggcgttccagcaggagagtgtttcgggttgctgggggtgaatggcgcagggaaa
accaccacctttaagatgttgacgggggacacagacgtgtcctcaggagacgccgctgtg
acgggctacagcattctcagtaacatcctggacgtgcaccagaacatgggctactgtccc
cagttcgacgccatcgatgacttgctgacaggtcgagagcacctgttcctgtatgcgcgg
ctacgtggcgtacctgagggcgaaatcaacagggtggcagagtggggtatccagaaacta
ggtctgtcggagtacgctgagcgatgtgccggcacctacagtgggggcaataagcgaaag
ctctccacagccatcgccatgatcggctgtccctccctcgtcttactggatgagcctacg
acaggaatggacccccactcccggcgattcttgtggacggcaattctgagtgtgatcagg
gatggccgcgcggtggtcctcacttcacacagcatggaggagtgtgaggctctctgcaca
cggctggccatcatggtgaacggcaccttcaagtgcctcggcagcattcagcacctcaag
tacaagtttggcgacggttacgtggtcaccttgaaagtgcgggcggctaagccgggaact
cccccagaccttgccttggccgaggctttcatcgagagcagcttccctggctgcgtccag
cgggagaagcactataacacgctgcagtaccagatcacctcctcctccttggctcgcatc
ttccagctcgtgctctccaacaaggagcgtctccacatagaggactactcggtctcccag
accaccctggaccaggtgtttgtgaacttcgccaaacagcaggcaggtgaggatgaggac
cagcggcctcagccgcggagagtgaagaagatcgccccactgagaggcttcgggaggaag
aaataa
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