Alosa sapidissima (American shad): 121724842
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Entry
121724842 CDS
T11137
Symbol
taf4b
Name
(RefSeq) transcription initiation factor TFIID subunit 4 isoform X1
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
asad Alosa sapidissima (American shad)
Pathway
asad03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
asad00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
121724842 (taf4b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
asad03021
]
121724842 (taf4b)
03036 Chromosome and associated proteins [BR:
asad03036
]
121724842 (taf4b)
Transcription machinery [BR:
asad03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
121724842 (taf4b)
Coactivators
SAGA/TFTC/STAGA complex
121724842 (taf4b)
Chromosome and associated proteins [BR:
asad03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
121724842 (taf4b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
Motif
Other DBs
NCBI-GeneID:
121724842
NCBI-ProteinID:
XP_041967634
LinkDB
All DBs
Position
12:complement(9193603..9211968)
Genome browser
AA seq
812 aa
AA seq
DB search
MSANSSSECSQTQQTSENACQTSADAGAGETSTIEGSDVAQLASTDRQASPHNAADDARL
GSHDPKPSIISNDKAVSNSPASHRPSPPSTATGGGGGTVGQTNVSPIQVCPTSSVASPRI
SVPKAQTTPTQPTMVKTVAPTPPRTPALKTSVAMVRPPQTASVQLPATFQIPPGMVLVRS
DSGQLMLVSQQALAQAQRVVNNPGLVQPSAATVIRKPGSAPIIRVCPPVSTPRATYTMGT
IPPRPSSTTGPTLQRPNAVGRVAYRPTTAVGTITQRPSSTMGTNTQRPSSAVGTIPQRAS
SAVGTVPQRLSSVVGATRQHITSTTGATIIKASVAGLSTTPAVGQSSHPGGLAPRILSTN
VPTKPKTAPSNAVSSQQTIENVKKCKNFLVTLMKLASSGGHSSDMGMNVRNLVKSLLDGK
LEAEEFTEKLYAELKSSPQPYLVTFLKRSLPAVRQLTPNSQLFIQQCEQPSAPAAPPAQP
STSGQPVRSTQLLIQPQQTVVIKKPVTSQPAAQGGGVAKHFLLQTNRTPTTGVIVGPSAQ
ISKSHPASSLPTLNLSFKESTGTFRDEDDINDVASMAGVSISEERARILATGAESVGLVV
RSCRDQPFLCPTALRTRITHTGSVCVCVCVCETMSVGVCGLEGDVVGLVSHATEERLRDL
LGKLSVTAQHRHLQLKDCWQYQQVTDVRSQLRFLEQVERLQQQRRDEEEREMLLRIAKSR
SSREDPEQQCLKQKAKEMQQLELAQAQHRQANLAALAAIGPRRKRPLEVSSAVGQRSTSR
PVLRVTLRDLIFCMEQDSHLSHSLLLYSAMLK
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcaaacagcagttcagagtgcagccaaacacaacagacatctgagaacgcgtgc
caaacttcagcagatgcaggcgctggggaaacttctacgattgagggaagcgatgtagcg
caactagcaagtacagacaggcaggcttcgccccacaacgccgcagatgacgccaggctc
ggtagccatgaccccaagccaagcattatcagtaatgacaaagcggtgtccaactcgccg
gcctcgcacaggccatcgccgccaagtactgcgactggtggtggcggtggtacggtgggt
cagacaaacgtgtcacccatccaggtttgtccgactagtagtgtggcgtctcctcgtatc
tcagtgccaaaggcccagactactcccactcaaccaacaatggtgaagactgtcgcccct
actcctccaaggacacctgcactaaaaaccagtgtggccatggtaaggccaccacaaacc
gcttcagtccagcttcctgcaacattccagatcccgccgggtatggtgctggtgcgtagc
gacagcgggcagctaatgctcgtatcccagcaggctttagcgcaggctcagagagtcgtc
aataacccaggcctggtccagccatctgcggccactgtcatcaggaagcccggatctgcc
ccgatcatcagagtctgccctcctgtcagcactcccagggccacctacaccatggggacc
attccaccaaggcctagctccaccacagggcccaccttacagaggcccaatgctgtggga
agggttgcctacaggcccaccacagctgtggggaccatcactcagaggcccagctccacc
atggggaccaatacgcagaggcccagctctgccgtggggaccattccccagagagccagc
tctgccgtaggaactgtcccccagagactcagctcagttgtaggagcaactcgtcaacac
atcacttccacgacaggagccaccatcattaaggcttctgtagctggactctccaccact
ccagctgtgggtcagtcaagccacccaggaggcctcgccccccgaattctttcaacaaat
gtccccaccaaacccaagactgctccctccaatgccgtttcctcgcagcagacaattgag
aatgtgaagaagtgcaagaacttcctggtgaccttgatgaagctggcctccagtggcggt
cactcctcagacatgggtatgaacgtccgcaacctggtcaaaagcctgctggatgggaag
cttgaagcagaggagttcacagagaaactttacgctgagctgaaatcatctcctcagcca
tacttggtgacattcctgaagaggagtctccctgctgtgcggcagctcaccccaaactcc
cagctcttcatccagcagtgtgagcagcccagtgccccggctgcccctcctgcccagccc
tccacctccggtcagccagtgaggtcaactcagctgctgattcagccccagcaaactgta
gtcatcaagaagcctgtgacctcacaacctgctgcccagggagggggtgtggccaaacac
tttttgctccagaccaacagaacacccaccacaggtgtgatagtggggccctcagcacag
atctcaaagtcgcaccccgcatcctcactgcccactctcaatctcagctttaaggagagc
accggcaccttccgggatgaggatgacatcaatgatgtggcatccatggctggcgtgagc
attagtgaggagagagcccgtatcctggcaactggcgcagagtcggttggactggtcgtt
aggtcttgccgagaccagccatttctctgtcccactgccctacgcacacgcattactcat
acaggtagtgtgtgtgtgtgtgtgtgtgtgtgtgaaaccatgtctgtaggtgtgtgtggt
ttggaaggagatgttgtgggtctggtgtcccatgccactgaggagcggctcagagacctg
ctgggaaaactctcagtcactgcacaacaccgccacctgcagttgaaggactgctggcag
taccagcaggtgaccgatgttcggagtcagctgcgcttcctggagcaggtggagcgactg
cagcaacagcgcagggatgaggaggagagggagatgctgctccgcatcgccaagagtcgg
tccagcagggaagaccctgaacagcagtgtctcaagcagaaggcaaaagagatgcagcag
ctggagttggctcaggcccagcacaggcaggctaacctggcagctctcgctgccattggt
ccccgcaggaagcgccccctggaggttagcagtgctgtgggtcagaggagcacgtctagg
cctgtgttgcgggtcacgctcagggatctcatcttctgtatggagcaggactcccatctg
tcccattcccttctgctctacagtgccatgctgaagtaa
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