KEGG   Alosa sapidissima (American shad): 121724891
Entry
121724891         CDS       T11137                                 
Symbol
med16
Name
(RefSeq) mediator of RNA polymerase II transcription subunit 16
  KO
K15159  mediator of RNA polymerase II transcription subunit 16
Organism
asad  Alosa sapidissima (American shad)
Brite
KEGG Orthology (KO) [BR:asad00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:asad03021]
    121724891 (med16)
Transcription machinery [BR:asad03021]
 Eukaryotic type
  RNA polymerase II system
   Mediator complex
    Tail
     121724891 (med16)
SSDB
Motif
Pfam: Med16_bridge Med16_N Med16_C WD40 Beta-prop_WDR3_1st Beta-prop_IFT140_1st WD40_WDHD1_1st Beta-prop_THOC3 ANAPC4_WD40 Beta-prop_WDR5 WD40_CDC20-Fz Beta-prop_IFT122_1st Beta-prop_WDR35_TULP_N WD40_Prp19 Beta-prop_EML_2 DSE1_N Beta-prop_EML Beta-prop_HPS5 WD40_MABP1-WDR62_2nd ASA1 Beta-prop_NUP159_NUP214
Other DBs
NCBI-GeneID: 121724891
NCBI-ProteinID: XP_041967722
LinkDB
Position
12:complement(36728674..36743154)
AA seq 834 aa
MEVGYVCEWEKRPRSNHCPSIPLVCAWSCRNLIAFTTDLKNEEDEKDLSRMIHIIDTEHP
WDVYSINSGHTEVISCLEWDQSGSRLLSADGDGQIKCWAMTEHLVNSWESTHSSAVDGDP
IVALSWLHNGVKLALHVEKSGSTNFGEKFSRVKFSPSLTLFGGKPMEGWLAVTVSGLVTV
SLLKPNGALLSASESLCRLRGRVALADIAFTGGGNIVVAATDGSSSSPVQFYKVCVSVVN
EKCRIDTELLPSLFMRCTTDPARRDKYPAVTHLKFLTRENSEQVLLCASSQMGSIVECWS
LRKEGLPVNNIFHQRSPAVGEKQPMILKWRILSATNDLDRVSAVALPKLPISISNTDLKV
ASDTKFCPGLGLALAFHDGSIQVLHRLSLHTMGVYYGSSSGSSQRVGEEPAIKRQRAGGP
TIHFKALQFSWTSLALVGVDNHGKLHMIRVSPSMGQMLDMNTLLRHLLFLLEYCMVTGYD
WWDVLLHVQPGMVHNLVERLHEEYMRQNQALQQVLSTRIVAVKASLCKLSSATAARACDF
HAKLLLIAISSTLKSLLRPHVLSTPDKSPGDRLAEICTKNTDTDIDKVMINLKTEEFVLD
GPPLQSLQQLIQWVGDFVLYLMANLPNQGSVVRPGFGFLRDGASLGMLREMMVMIRIWGL
LKPGCLPIYTATSDNQDSMSLLFRLLTKLWLCSRDEGHPQEPDESLIDECCLLPSQLLVP
SMDWLPINDGVITKMQSKQPLRLQFGKPYTLPSLTSNTQVDIFSRSPGSQRMDNLRCLHL
GVYPTEDSKACTRCGCVTMLRSPNKTNAMKQWEQRWIKNCLCGGLWRRIPPVLS
NT seq 2505 nt   +upstreamnt  +downstreamnt
atggaagtaggatatgtctgtgagtgggagaagagacccaggagcaaccattgcccttca
atcccgcttgtgtgtgcatggtcatgcagaaacctcatcgcgttcaccaccgatcttaaa
aatgaagaggatgaaaaagatcttagccgtatgattcatattattgatacggagcatcca
tgggacgtgtactcgatcaactcgggccacacagaggtgatcagctgcttggaatgggac
cagtcagggtcgcggttgttgtcagcggacggcgacggtcagatcaagtgctgggccatg
acggagcatctggtgaacagctgggagagcacgcacagcagcgcggtggacggcgacccc
atcgtggccctgtcctggctacacaacggcgtcaaactggccctgcatgtggagaagtcg
ggctccactaactttggggagaagttctcgcgggtgaagttctcgccgtcgttgacgctg
ttcggggggaagccgatggagggctggttggccgtaacggtcagtggcctggtgaccgtg
tctctgctcaagcccaacggcgcgttgctaagcgccagcgagagtctgtgccgcctgcgg
ggacgcgtggcgctcgccgacatcgctttcacgggcggaggcaacatcgtcgtcgcggcg
acggatgggagcagctcgtcgccagtgcagttctacaaggtgtgtgtgagcgtggtgaac
gagaagtgtcgcatcgacactgagctgctgccctccctcttcatgcgctgcaccactgac
cccgcgcgcagagacaagtacccggccgtcacgcacctcaagttcctcacgcgcgagaac
tccgaacaggtgctgctttgtgcctctagtcagatgggcagcatagtggagtgctggtca
ctgcggaaggaaggacttcctgtcaataacattttccaccagcgctcaccagccgtgggc
gagaagcagcccatgatcctgaagtggcgaatcctctctgccaccaacgaccttgaccgc
gtgtctgctgtcgctcttccgaagctgcccatctccatctccaacaccgacctcaaagtg
gcgtccgacaccaagttctgccctggcctgggcctggctctggcattccacgacggcagt
attcaggttctgcaccggctctctctccacaccatgggcgtgtactacggttcttcctcc
ggttcctcccagcgcgtgggcgaggaacccgctatcaagaggcagcgtgccggaggcccc
accatccacttcaaggccctgcagttctcctggacctcgctggccctggtcggagtggac
aaccatgggaagctgcacatgatccgtgtgtcaccgtccatgggtcagatgctggacatg
aacacgctgctgcgccacctgctgttcctgctggagtactgcatggtgacgggctacgat
tggtgggacgtgctgctccacgtgcagccagggatggtgcacaacctggtggagcgtctg
cacgaggagtacatgaggcagaaccaggccctgcagcaggttctgtccacgcggatcgtg
gcggtgaaggcgtcgctgtgtaagttgtcgtcggcgacggcggcgcgtgcctgtgacttc
cacgccaagctcctcctcatcgctataagctccaccctcaagtcgctgctgcgcccgcac
gtgctcagtacgcccgacaagagtcccggtgaccgcctggccgagatctgcaccaaaaac
acagacactgacatcgataaggtgatgatcaacctgaaaacggaggagttcgtgctggac
gggccgcctctgcagtctctccagcagctcatccagtgggtcggcgacttcgtgctttac
ctgatggccaacctgcccaaccaggggtcagtggtgcgtccgggcttcgggttcctgcgt
gacggcgcgtccctgggcatgctcagagagatgatggtgatgatccgtatctggggcctg
ctgaagccgggctgcctgcccatctacacggccacctccgacaaccaggacagcatgagc
ctcctgttccgcctgctgaccaagctctggctctgctcacgggacgagggtcacccccag
gagccggacgagtctttgatcgacgagtgctgcctgctgcccagtcagctgctggtgccc
agtatggactggctgcccatcaacgacggcgtcatcaccaagatgcagagcaagcagccg
ctgcggctacagttcggcaaaccctacacgctgcccagcctcacgtccaacacacaggtg
gacatcttctccaggagccccgggtctcagcggatggataacctgcgctgtctacacctg
ggggtgtatcccactgaggacagcaaggcctgcaccaggtgtggctgtgtgaccatgctg
cgctcccccaataagaccaacgccatgaagcagtgggagcagcgctggataaagaactgc
ctgtgtggaggcctgtggaggaggataccccctgtgctctcctga

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