Aggregatimonas sangjinii: FGM00_09425
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Entry
FGM00_09425 CDS
T07837
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
asag
Aggregatimonas sangjinii
Pathway
asag03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asag00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FGM00_09425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asag03019
]
FGM00_09425
03009 Ribosome biogenesis [BR:
asag03009
]
FGM00_09425
Enzymes [BR:
asag01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FGM00_09425
Messenger RNA biogenesis [BR:
asag03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FGM00_09425
Ribosome biogenesis [BR:
asag03009
]
Prokaryotic type
rRNA helicases
FGM00_09425
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QCX00319
UniProt:
A0A5B7SSN2
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All DBs
Position
2293539..2295326
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AA seq
595 aa
AA seq
DB search
MTKFEALGLQQSLLDAVADMGFETPSEVQEKAIPILLESETDLVALAQTGTGKTAAFGFP
LIQKIDSNSRTTQGLILSPTRELCLQITKEIQSYSKYEKNINVVAIYGGASITEQSRQIK
RGAQIIVATPGRMKDMIGRRLVDISKIDYCILDEADEMLNMGFFEDIKDILSNTPDEKST
WLFSATMPKEVSVIAKKFMQNPKEITVGAKNAGTSTVQHEYYTVGGRDRYPALKRLADAN
PDIFSVVFCRTKRDTQRVAEKLIEDGYNAGALHGDLSQNQRDLVMNSFRKKQIQMLVATD
VAARGIDVDDITHVINYQLPDEIETYTHRSGRTGRAGKSGISMVIVTRSELRKIQAIERK
IQQKFESNTIPTGPEICEIQLYHLANKIKDTKIAKDVDNYLPAINDVLEGIDREELIKKI
VSVEFTRFSNYYNKTKDLNTVSGRDSRDGERRGGQIPANGAVRYFINVGEKDGYDWMSLK
DFIRDTVGLGREDIFKVDVKDSFSFFNTEAESTEQILNTFTEFKVDGRFVNVEVSKSPGG
GGGKRRSGGGGRDRNRSRGRDKGGYGGKRRGDRDGNRKSASNSGKRRSTKRSDFF
NT seq
1788 nt
NT seq
+upstream
nt +downstream
nt
atgacgaaatttgaagcattagggcttcagcaatccctcttggatgctgttgccgacatg
ggttttgagaccccttcggaagtacaggaaaaagcaattccgattctacttgaaagtgaa
accgatttggttgccttggcgcaaaccggaacaggaaagaccgcagcctttggttttccg
cttatccaaaaaatagattcgaacagcagaaccacgcaagggttgatactttcccctacc
cgtgagctctgtttacagattacgaaagagattcaatcgtattccaaatacgaaaaaaac
atcaacgtcgttgctatctacggaggtgcgagcattacagagcagtccagacaaatcaaa
cgtggcgcacagattatcgtagccacaccgggtcgtatgaaagatatgatcggccgtcga
ttggtcgatatctcaaaaatcgactattgtatactcgatgaagcggatgaaatgctcaac
atgggctttttcgaagacattaaagatatcctttcgaataccccggacgaaaagtcgact
tggctcttttcagcgaccatgccaaaagaggtatcggtcattgccaagaagttcatgcaa
aatccgaaagaaattacggtaggcgccaaaaatgcaggtaccagtacggtacagcatgaa
tactacaccgtaggtggtcgtgaccgttatcccgccttaaaacgattggccgatgcgaac
cccgatatcttttcagtggttttctgtcgtaccaagcgcgatacacaacgcgttgccgaa
aaattgattgaggatggatataacgccggtgcattgcacggagatttgagccagaaccaa
cgcgatttggtcatgaactctttccgtaagaaacaaatacaaatgttggttgcaaccgat
gttgccgcacgcggtatcgatgtagacgacattactcatgttatcaattaccaattgccc
gacgaaatcgaaacctatacacaccgtagtggtcgtacaggtcgcgctggaaaatcgggt
atttccatggttatcgttacccgaagcgaattgcgtaaaatccaagcgatcgaacgcaaa
atacagcaaaaattcgagtcgaacaccataccgacgggccctgaaatttgcgagatacag
ttgtaccatttggcgaataagatcaaggataccaaaatcgcgaaagatgtagacaactac
cttccggcgataaacgatgtcttggagggaatcgatagggaagaattgatcaaaaaaatt
gtttcggtcgaattcacaagattctcgaattactacaacaagaccaaagacctgaatacg
gtcagtggaagggattcaagggatggtgaacgccgtggcggacagattcctgccaacggt
gccgtacgttatttcatcaatgtaggtgaaaaggacgggtacgattggatgtccctaaag
gattttatccgcgataccgtggggctaggcagagaagatatctttaaagtagatgtaaag
gatagtttttccttctttaataccgaggccgagagtacggaacaaattctaaataccttt
accgaattcaaggttgacggtaggttcgtaaatgtagaagtctccaaaagccctggtggc
ggaggcggaaaaagacgaagtggagggggcggaagagaccgcaatcgcagccgaggacgt
gataaaggcggatacggaggtaaacgcagaggagaccgtgatggaaatcgcaaaagtgct
tcgaattcaggaaaacgaagaagtacaaaaagaagcgatttcttttaa
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