Aggregatimonas sangjinii: FGM00_10665
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Entry
FGM00_10665 CDS
T07837
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
asag
Aggregatimonas sangjinii
Brite
KEGG Orthology (KO) [BR:
asag00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
asag03009
]
FGM00_10665 (rlmD)
Enzymes [BR:
asag01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
FGM00_10665 (rlmD)
Ribosome biogenesis [BR:
asag03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
FGM00_10665 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
MTS
TRM5-TYW2_MTfase
Cons_hypoth95
Methyltransf_15
TRAM
N6_N4_Mtase
Methyltransf_11
PCMT
PrmA
Methyltransf_12
UPF0020
FtsJ
Methyltransf_2
DUF5071
Motif
Other DBs
NCBI-ProteinID:
QCX00551
UniProt:
A0A5B7SUJ1
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All DBs
Position
2575629..2577038
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AA seq
469 aa
AA seq
DB search
MRRKNKRRVFENVAVLDAGAKGKTIGKAPDGRVIFLTNTVPGDVVDVQTTKKRKSYFEGV
ATKFHSLSEKRVTPECQHFGVCGGCKWQDMGYEHQLFYKQKEIENNLRRIGHLELPEVSP
ILGSKQQYFYRNKMEFSFSNSRWMTLEEIQSDREITDRDALGFHIPGMWDKILDIKKCHL
QKDPSNAIRLAVKEFAIQNKLAFFNPRQQEGLLRTLMIRTTSTGELMVLLQFYADEPSNR
ELLLNYLKTTFPEITSLLYVVNQKQNDTIYDQKIISFAGRDHIFEEMEGLQFKINAKSFY
QTNSEQAYELYKITRDFAGLTGNELVYDLYTGTGTIAQFVAKKARKVVGIESVPDAITAA
KENAAHNALDNVDFFVGDMKQVFNTKFIAENGTPDIIITDPPRDGMHKDVVQQILLIAPK
KIVYVSCNSATQARDLELMKEAYKVVKVQPVDMFPQTHHVENVVLLEKR
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atgcgaagaaagaacaagcgacgggttttcgagaatgtagcggttttggatgccggggca
aaaggcaaaaccataggaaaggcccccgatggaagggtcatctttttgacgaataccgta
cctggcgatgtagtggacgtacaaactacgaagaaaaggaaatcttattttgaaggtgtc
gcgacaaaatttcattcgctgtcggaaaaaagggtaactcccgaatgtcaacatttcggt
gtttgtggcggttgcaaatggcaggatatgggctacgagcaccagcttttttacaagcag
aaggaaatagagaacaacctcaggcgtatcggacacttggagcttcccgaggtctctcct
atccttgggtcgaagcagcagtatttctatagaaataaaatggaattctcgttctcgaat
agccgatggatgactttggaggaaattcaatcggatagggaaattaccgatagagatgcg
ctcggattccatattcccggtatgtgggataaaatattggatattaaaaagtgccatctg
caaaaggacccttctaatgccattcgacttgctgtaaaagaattcgcgattcaaaacaag
ctcgcttttttcaatcccagacaacaggaaggattattgcgaaccttaatgatcagaacg
acttccacgggggaattgatggtattgctacagttctatgccgatgagccttcgaaccga
gagttgctgttaaattacttgaagaccacctttccggaaatcacatcgctgctttacgtg
gtcaaccaaaaacaaaacgatacgatttacgatcaaaaaatcatcagttttgccggtcgg
gaccatatttttgaggagatggaaggtctacagtttaaaatcaatgccaaatcgttctac
cagaccaattcagaacaggcttatgaactctataagattacaagggattttgcaggtcta
acaggtaatgaactggtctacgatttatacacgggaacgggtactatagcgcaattcgta
gccaaaaaggccagaaaagtagtcggtatcgaatccgttccggatgctattaccgcagca
aaagagaatgcggcgcacaatgcattggacaatgtagatttcttcgtcggagacatgaag
caggttttcaataccaaatttattgctgaaaatggcactcctgacatcatcattaccgat
ccacctagagatggtatgcataaggatgtggtacaacaaattctgcttatcgccccaaaa
aagattgtttatgttagctgcaacagtgccacacaagcaagggatttggagctgatgaag
gaggcgtataaagtggtcaaagtgcagcctgtggatatgtttccccagacccaccatgtt
gaaaatgttgtacttttagaaaagcgatag
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