Acidovorax sacchari: AVXHC19_00140
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Entry
AVXHC19_00140 CDS
T10802
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
asah Acidovorax sacchari
Brite
KEGG Orthology (KO) [BR:
asah00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
asah03016
]
AVXHC19_00140
Enzymes [BR:
asah01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
AVXHC19_00140
Transfer RNA biogenesis [BR:
asah03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
AVXHC19_00140
Prokaryotic type
tRNA splicing ligases
AVXHC19_00140
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
BFO53211
LinkDB
All DBs
Position
18729..20018
Genome browser
AA seq
429 aa
AA seq
DB search
MAEDNFPSTLVAATYFMEKNNMSKTSYQLQEVPGGVPVKMWTQGVPVEDEARQQLANAAR
LPIVFKHIAAMPDVHLGIGATVGSVIPTLKAIIPAAVGVDIGCGMMAAKTTLRAEDLPDN
LGPLRSAIEQAVPHGSAPRHRGRDPGSWEQPPEAVDQAWATLADEFEALCELHPRLKNTN
NHKHLGTLGTGNHFIEVCLDEAGFVWFMLHSGSRGVGNAIGTHFIELAKKDAELHQRNLP
DKDLAYFEEGARYFGDYVRGVSWAQKFAMKNREVMMDRLIATVRKAIPKPFEAHVEAVNC
HHNYVQQERHFGQDVFVTRKGAVSARRGQMGIIPGSMGARSYIVRGLGNPESFESCSHGA
GRVMSRTKAKKQFTVEDHARATAGVECRKDADVIDEIPMAYKDIDAVMAAQKDLVEVVHT
LKQVVCVKG
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atggcggaagacaatttcccatcgaccctcgtcgccgcaacctatttcatggagaagaac
aacatgtcgaagacgagctatcaactgcaggaagtgcccggcggcgtgccggtgaagatg
tggacgcagggcgtgccggtcgaggacgaggcccgccagcagctggcgaacgcggcacgc
ctgccgatcgtgttcaagcacatcgcggccatgccggacgtgcacctgggcatcggcgcc
accgtgggttcggtgatcccgaccttgaaagccatcatcccggccgccgtgggggtggat
atcggctgcggcatgatggccgcgaagaccacgctgcgcgccgaggacctgccggacaac
ctgggcccgctgcgctcggccatcgaacaggcggtgccgcacgggtcggccccgcgccac
cgtggccgcgatccgggcagctgggaacagccgcccgaagccgtggaccaagcctgggcc
acgctggccgacgagttcgaggcgctgtgcgagctgcacccgcgtctgaagaacacgaac
aaccacaagcacctgggcacgctgggcacgggcaaccacttcatcgaggtctgcctggac
gaagccggcttcgtgtggttcatgctgcactccggctcgcgtggcgtgggcaatgccatc
ggcacgcatttcatcgaactggcgaagaaggacgcggaactccaccagcgcaacctgccc
gacaaggacctggcctatttcgaggaaggggcccggtacttcggggactacgtgcggggc
gtttcctgggcgcagaagttcgcgatgaagaaccgcgaagtgatgatggaccggctgatc
gccaccgtgcgcaaggcgatccccaagccgttcgaggcgcacgtggaggcggtgaactgc
caccacaactacgtgcagcaggagcggcatttcgggcaggacgtgttcgtgacccgcaag
ggcgcggtgagcgcgcggcgcggccagatggggatcatcccgggcagcatgggcgcgcgc
agctacatcgtgcgcggcctgggcaacccggagagcttcgagagctgcagccacggcgcc
ggccgcgtgatgagccgcaccaaggcgaagaagcagttcaccgtcgaggaccatgcccgg
gcaacggcgggggtcgagtgccgcaaggatgccgacgtgatcgacgagatcccgatggcc
tacaaggacatcgacgccgtcatggccgcgcagaaggacctggtcgaggtggtgcacacg
ctgaagcaggtggtgtgcgtgaagggttga
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