Acidovorax sacchari: AVXHC19_08150
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Entry
AVXHC19_08150 CDS
T10802
Name
(GenBank) RNB domain-containing ribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
asah Acidovorax sacchari
Brite
KEGG Orthology (KO) [BR:
asah00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
asah03016
]
AVXHC19_08150
Enzymes [BR:
asah01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
AVXHC19_08150
Transfer RNA biogenesis [BR:
asah03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
AVXHC19_08150
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
RNase_II_C_S1
ProQ_C
Myosin_N
WHD_RNase_II
Motif
Other DBs
NCBI-ProteinID:
BFO54012
LinkDB
All DBs
Position
complement(890238..892319)
Genome browser
AA seq
693 aa
AA seq
DB search
MHALFEEAGKFLAGRILSEAESSAQIELESGKRVKVKAAHILLKFEKPAPADLLREGQAL
AATIELPLAWEFAPEEEFGFADLARDYFSENATLAQQAGALFALYEAPHYFRRAGKGRFK
KAPAEILQQALAGIEKKRLVQEQIAAWAEQLGRGECPQPIREQLYRILFRPDKNAPEYKA
VVEASRATHKAPLDLLQQAGAIDSPYQFHWKRFLFDNFPKGTGFPSLTAPQPPADLPLAP
VQAYSIDDSQTTEIDDALSVQGLGTGTVVLGIHIAAPGLAIVPGSPLDQLGRQRLSTVYM
PGYKITMLPDEVVQIYTLDEGRANPAVSLYVSIDEATLEITGSETKLERVPVAVNLRHDR
LDHIVTEEWLQDPSVEVEGTPAALQERRAELSFLHRLARKLKAQREVVRGKPETFNRPDY
NFRLAGVPEGGEPTGAETVSITTRRRGAPLDLIVAEAAIVANSTWGGLLADHGVPGIYRS
QASLAPGMKVRMGTKALPHAGIGVKSYAWATSPLRRYVDLVNQWQIIACVRHGKTAALAA
PFKPKDADLFSIISSFDAAYSAYNGYQAGMERFWTLQYLRQNGIAEIDASVIKDGGGGSY
LVRADELPLVLPVLGAQALPRGARVRVKLGEIDDITLDVNGTVVERLDDPADPGDDAIAG
EPEGDDEEAVAGPIAIAVDVNEAEGTNAQPAAS
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atgcacgcactgtttgaagaagccggcaagttcctggccggccgcatcctgtccgaagcg
gaaagctcggcccagatcgagctcgaatcgggcaagcgggtgaaggtgaaggccgcccac
atcctgctgaagttcgagaagccggccccggccgacctgctgcgcgagggccaggccctg
gccgcgaccatcgagctgcccctggcctgggagttcgccccggaagaggaattcggcttc
gccgacctcgcccgcgactatttctccgagaacgccacgctggcccagcaggcgggcgcg
ctgttcgcgctctacgaggcaccgcactacttccgacgcgccggcaagggccgtttcaag
aaggcgccggccgagatcctgcagcaggcgctggccggcatcgagaagaagcgcctggtc
caggagcagatcgcagcctgggcggagcagctgggccgcggcgaatgcccgcagccgatc
cgcgagcagctctacaggatcctgttccggcccgacaagaacgcgcccgagtacaaggcg
gtggtggaagccagccgcgccacgcacaaggcgccgctcgacctgctgcagcaggcgggt
gccatcgattcgccctaccagttccactggaagcgcttcctgttcgacaacttccccaag
ggcacgggctttccgtcgctcacggcgccccagccgccggccgacctgccgctggcgccc
gtgcaggcctattcgatcgacgactcgcagaccaccgagatcgacgacgcgctctcggtg
cagggcctgggcaccggcacggtggtgctgggcatccacatcgccgcgcccgggctggcg
atcgtgccgggctcaccgctcgaccagctcggccggcaacggctgtccaccgtctacatg
ccgggctacaagatcaccatgctgccggacgaagtggtgcagatctacacgctggacgaa
ggccgcgcgaacccggcggtttcgctctacgtgtccatcgacgaggccacgctggagatc
accggctcggagacgaagctcgaacgcgtgcccgtggcagtgaacctgcgccacgaccgg
ctggaccacatcgtcaccgaggagtggctgcaggacccgtccgtggaggtggagggcacg
cccgccgcgctgcaagagcgccgggccgaactgtcgttcctccaccgcctggcgcgcaag
ctcaaggcgcagcgcgaggtggtgcgcggcaagcccgagaccttcaaccggcccgactac
aacttccgccttgcgggcgtgcccgagggcggagagccgaccggcgccgagaccgtctcg
atcaccacgcgccgccgcggcgcgccgctggacctgatcgtggcggaggccgccatcgtg
gccaacagcacctggggcggcctgctggccgaccatggcgtgcccggcatctaccgcagc
caggcgagcctcgcgcccggcatgaaggtgcgcatgggcaccaaggccctgccccacgcg
ggcatcggcgtgaaaagctatgcctgggcgacctcgccgctgcgccgctacgtcgatctg
gtgaaccagtggcagatcatcgcctgcgtgcgccacggcaagacggccgcgctcgcggcg
ccgttcaagcccaaggatgcggacctgttctccatcatcagcagcttcgacgcggcctac
agcgcctacaacggctaccaggccggcatggagcgcttctggacgctgcagtacctgcgc
cagaacggcatcgccgaaatcgatgccagcgtgatcaaggacggtggcggcggcagctac
ctggtgcgcgcggacgagctgccgctggtgctgcccgtgctgggcgcccaggcgctgccc
cgcggggcgcgcgtgcgcgtgaagctgggcgagatcgacgacatcacgctggatgtgaac
ggcacggtggtcgagcgcctggacgatccggccgatccgggggacgacgccatcgccggc
gagcccgagggcgacgacgaggaagccgtggccggcccgatcgccatcgcggtggacgtc
aacgaggccgagggaacgaacgcacagcccgcagcgtcctga
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