Acidovorax sacchari: AVXHC19_11890
Help
Entry
AVXHC19_11890 CDS
T10802
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
asah Acidovorax sacchari
Pathway
asah03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asah00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AVXHC19_11890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asah03019
]
AVXHC19_11890
Enzymes [BR:
asah01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AVXHC19_11890
Messenger RNA biogenesis [BR:
asah03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AVXHC19_11890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
BFO54386
LinkDB
All DBs
Position
1320470..1321939
Genome browser
AA seq
489 aa
AA seq
DB search
MTSSFSNLSLAEPLARAVAEMGYTSMTPIQAEAIPVVLTGQDVMGAAQTGTGKTAAFSLP
LLQRLLKHENSSTSPARHPVRALVLLPTRELADQVAQQIALYAKYTKLRSTVVFGGMDMK
PQTLELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSY
LPKTRTTLLFSATFSPEIKRLAGSYLQNPVTIEVARPNETASTVEQRFYSVNDDDKRRAI
HHVLRTRGVKQAFVFVNSKLGCARLSRTLEREGLKAAALHGDKSQDERLKALDAFKRGEV
DLLVCTDVAARGLDIKDVPAVFNFDVPFNAEDYVHRIGRTGRAGASGLAVTLVSSSDARL
VADIEKLTKKKIDLEALEVEEDRPRGRFNDGRRAWRDDESGGDARGRRESRGESRDSRPQ
GGYRTPAAARDPFFDKPYEAPAANGAPSWEAASRQQPARSGISANIKPKRKVAALFKAAM
PAVETPSGQ
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgacaagttctttctccaatttatcgctggccgagccgctggcgcgcgccgtggccgag
atgggctacacgtcgatgacccccatccaggccgaggccattcccgtggtgctcaccggc
caggatgtgatgggcgccgcgcagaccggcaccggcaagacggcggcgttctcgctgccg
ctgctgcagcgcctgctcaagcacgagaacagctccacctccccggcgcgccatcccgtg
cgcgccctggtgctgctgcccacgcgcgaactggcagaccaggtcgcccagcagatcgcc
ctctacgccaagtacaccaagctgcgcagcaccgtggtcttcggcggcatggacatgaaa
ccccagacgctggagctcaagaagggcgtggaagtcctcgtggccactccgggccgcctg
ctggaccacatcgaggccaagaacgcggtactgaaccaggtcgagtacgtggtgctcgac
gaggccgaccgcatgctggacatcggtttcctgcccgacctgcagcgcatcctgagctat
ctgccgaagacgcgcaccacgctgctgttctcggccacgttctctccggaaatcaagcgc
ctggcgggcagctacctgcagaacccggtcaccatcgaggtcgcccgccccaacgagacc
gcctccacggtcgaacagcgcttctacagcgtgaacgacgacgacaagcgccgcgccatc
caccacgtgctgcgcacgcgcggggtcaagcaggccttcgtcttcgtcaacagcaagctg
ggctgcgcgcgcctgtcgcgtaccctggagcgcgaaggcctgaaggccgctgcgctgcac
ggcgacaagagccaggacgagcgcctgaaggcactggacgccttcaagcgcggcgaggtg
gacctgctggtgtgcaccgacgtcgcggcccgcggcctcgacatcaaggacgtgcccgcg
gtgttcaatttcgacgtgccgttcaacgccgaagactacgtgcaccgcatcggccgcacg
ggccgcgcgggcgcctccggcctcgccgtcacgctggtgtcgagcagcgatgcccggctg
gtggctgacatcgagaagctcacgaagaagaagatcgatctcgaggccctggaagtggaa
gaggaccgcccgcgcggccgcttcaacgacggccgccgcgcctggcgcgacgacgagtcc
ggcggcgatgcgcgtggacggcgggaaagccgtggcgaaagccgcgactcccggccgcag
ggcggctaccgcacgcccgccgccgcgcgcgatcccttcttcgacaagccgtacgaggcc
ccggccgccaacggggcgcccagctgggaggccgcttcccggcagcagcccgcgcgcagc
ggcatttccgccaacatcaagcccaagcgcaaggtcgccgcgctcttcaaggccgccatg
ccggccgtggaaaccccgtccggccagtga
DBGET
integrated database retrieval system
