Acidovorax sacchari: AVXHC19_12160
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Entry
AVXHC19_12160 CDS
T10802
Name
(GenBank) hypothetical protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
asah Acidovorax sacchari
Pathway
asah03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asah00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AVXHC19_12160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asah03019
]
AVXHC19_12160
03009 Ribosome biogenesis [BR:
asah03009
]
AVXHC19_12160
Enzymes [BR:
asah01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AVXHC19_12160
Messenger RNA biogenesis [BR:
asah03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AVXHC19_12160
Ribosome biogenesis [BR:
asah03009
]
Prokaryotic type
rRNA processing factors
AVXHC19_12160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
dnstrm_HI1420
Motif
Other DBs
NCBI-ProteinID:
BFO54413
LinkDB
All DBs
Position
complement(1352562..1355690)
Genome browser
AA seq
1042 aa
AA seq
DB search
MKRMLINATQPEERRLAIVDGQKLLDYEIEIEGREQRKGNIYKAVVTRVEPSLEACFVDY
GEDRHGFLPFKEISRQYFAEGVSPSQARINDVIREGQELLVQVEKEERGNKGAALTTFVS
LAGRYVVLMPNNPRGGGVSRRIEGEDRAELKEAMDQLEYPKGMSIIARTAGIGRSAPELQ
WDLNYLLKLWTAIDGAARGGKGAFLIYQESSLVIRAIRDYFNNDIGDILIDTDDIYEQAQ
QFMSHVMPEHAAKVKRYRDDAALFSRFQIEHQIESAYARTVTLPSGGAIVIDHTEALVSV
DVNSARAIKGGDIEETATRTNLEAADEVARQMRLRDLGGLIVIDFIDMEESKNRREVENR
LRDALRQDRARVQFGTISKFGLMEMSRQRLKPSLSEGAHIRCPRCDGTGHVRDTEGFSLQ
ILRMIQEESMKDNTAAVHCQVPVEVASFLLNEKRTEIAKIELKQRVSVLMVPNKTMETPK
YKLERLKHDDPRLDHIAASYKLAEEMEDPTTVTRRSQEPTNKQTPVIKGVLPDAPAPVAE
PRPETQRTAGARNGAHAAAAPAPAQAPAPAPAPAPAAPQEQGFFAWLKSLFGFGPRPAPA
PVSAPAAAPAPAPAADAPRDGRRGGRRGGRDGNGGGRDGQRENGAAEGRGRRGERGERPD
RAEGEAPRNGRGPRDAEGREGRPARERDRDREGGRENGRDASGRAEGESAPRNGREGREG
GRGRERREAGDAPRQQPLGTDAGMAAVAPDVGIEGQGAAPQERGERGPRNGERRERRERG
GDRRPRGEEGQAEFVDTSPMASLPDLDLTGGEAGSPAADSAQGEEPRRERRSRDRYGRDR
RERAPREGAEAEAAPVAESTTAQAVQDVGGESPAQEAPRRSYFSQGGGAPVPTGAPVASE
ASHSETPAEPAQAPASTPVAAPAPAAVAPVATAPAPAPVAAPAPAPAAAAAVPGLPRVQA
FQLPVDELNRIAESSGLQWVNSDAEKIAAAQAAIAAEPRPVHVPRERPPAVVLDEGPLVL
VETRRDLRDLKLPFEQQPSSVA
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atgaagcggatgctcatcaatgccacgcagcccgaagaacggcgcctcgccatcgtggac
ggccagaagctgctggactacgagatcgagatcgagggacgcgaacaacgcaagggcaac
atctacaaggcggtcgtcacccgcgtcgagcccagcctggaagcctgcttcgtggattac
ggcgaggaccgccacggcttcctgcccttcaaggaaatctcccgccagtatttcgccgag
ggcgtctcgcccagccaggcccgcatcaacgacgtgatccgcgaaggccaggaactgctg
gtccaggtcgagaaggaagaacgcggcaacaagggcgcggccctgaccaccttcgtgtcg
ctggccggccgctacgtggtgctgatgcccaacaacccgcgcggcggcggcgtgtcgcgc
cgcatcgagggcgaggaccgcgccgagctcaaggaggcgatggaccagctcgagtacccg
aagggcatgagcatcatcgcgcgcaccgccggcatcggccgctcggcgcccgagctgcaa
tgggacctgaactacctgctcaagctctggaccgccatcgacggcgccgccaggggcggc
aagggtgccttcctgatctaccaggagtcctcgctggtgatccgcgcgatccgcgactac
ttcaacaacgacatcggcgacatcctcatcgatacggacgacatctatgaacaggcacag
cagttcatgtcgcacgtcatgcccgagcatgccgccaaggtcaagcgataccgcgacgac
gctgcgctgttcagccgcttccagatcgagcaccagatcgaatccgcctacgcgcgcacc
gtgaccctgccctccggcggcgccatcgtgatcgaccacacggaagcgctggtgtccgtg
gacgtgaactcggcccgcgccatcaagggcggcgacatcgaggaaaccgccacccgcacc
aacctggaagccgccgacgaggtggcccgccagatgcgcctgcgcgacctgggcggcctg
atcgtgatcgacttcatcgacatggaggagagcaagaaccgccgcgaggtcgagaaccgc
ctgcgcgacgcgctgcgccaggaccgcgcccgcgtgcagttcggcacgatcagcaagttc
ggcctcatggaaatgagccgccagcgcctcaagccctcgctgagcgaaggcgcgcacatc
cgctgcccgcgctgcgacggcacgggccacgtgcgcgacacggaaggcttctcgctgcag
atcctgcgcatgatccaggaagagtccatgaaggacaacacggccgccgtgcactgccag
gtgccggtggaggtggcctcgttcctgctcaacgagaagcgcacagagatcgccaagatc
gaactcaagcagcgcgtgagcgtgctcatggttcccaacaagaccatggagacgcccaag
tacaagctcgagcgcctgaagcacgacgacccgcgcctggaccacatcgccgcgagctac
aagctggccgaggagatggaggacccgaccacggtgacgcgccgctcccaggagccgacg
aacaagcagaccccggtgatcaagggcgttctgcccgatgcgccggccccggtcgccgag
ccgcgccccgaaacgcagcgcacggcgggcgcacgcaacggcgcgcacgcggccgccgcg
cccgccccggcacaggcgcctgcaccggcccctgcgccggcaccggctgcgccccaggaa
cagggcttcttcgcatggctcaagagcctcttcggcttcggaccgcgccccgctccggca
ccggtgtctgcgccggccgctgcgccggcccccgcgcctgccgccgatgccccgcgtgac
ggacgccgtggaggccggcgcggaggacgcgacggcaacggcggcggccgtgacgggcag
cgcgagaacggtgccgcggaaggccgaggacgccgtggcgagcgcggagagcgccccgat
cgcgccgaaggcgaagcgccgcgcaacggccggggcccgcgcgatgccgagggccgcgaa
ggccggccggcacgggagcgcgatcgcgaccgcgaaggcggccgcgagaacggacgcgat
gcatccggtcgtgccgaaggagaatccgcgccccgcaatggccgtgaaggccgcgaaggc
ggccgtggccgcgagcgccgggaggccggggacgcaccgcgtcagcagccgctgggcact
gacgccggcatggcggcggtggctccggacgtcggcatcgaaggccagggtgccgcaccg
caggagcgtggcgagcggggtcctcgcaacggcgagcgacgtgaacgccgtgaacgcggc
ggcgaccgccgtccgcgcggagaagaaggccaggccgagttcgtggacacgtccccgatg
gcctcgctgcccgatctggacctgaccggcggagaagccggcagcccggccgcggactcc
gctcagggcgaggagccgcgccgcgagcgccggtcgcgcgaccgctacgggcgtgaccgc
cgggagcgtgcgccgcgtgaaggcgccgaggcggaagccgcaccggtggccgaatccacc
acggcacaggctgtgcaggacgtgggcggcgaaagccctgcccaggaagcgccgcgccgc
agctacttcagccagggaggcggcgcaccggtgcccaccggcgcgccggtggcatccgaa
gcctcgcacagcgaaacccctgcggaacccgcgcaggcaccggcaagcaccccggtggca
gcgccggcacctgccgcagttgcacccgtggcaacggcccctgcgcccgccccggtcgcc
gcgccagcgcctgcaccggccgcagccgcggccgtgccggggctgccacgcgtgcaggcc
ttccagctgccggtggatgagttgaaccggatcgccgaaagctcgggcctgcagtgggtg
aactccgatgcggagaagatcgccgccgcgcaggcagcgatcgccgcggagccccgcccg
gtgcatgtgccgcgcgaacggcctccggccgtcgtgctggatgaaggtccgctggtgctc
gtggagacccgccgcgacctgcgcgacctgaagctgccgttcgaacagcagccttcgtcc
gtcgcctga
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