Acidovorax sacchari: AVXHC19_16980
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Entry
AVXHC19_16980 CDS
T10802
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
asah Acidovorax sacchari
Pathway
asah03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
asah00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AVXHC19_16980 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
asah03400
]
AVXHC19_16980 (mfd)
Enzymes [BR:
asah01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AVXHC19_16980 (mfd)
DNA repair and recombination proteins [BR:
asah03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AVXHC19_16980 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
ERCC3_RAD25_C
Glyco_tran_WecG
AAA_30
Motif
Other DBs
NCBI-ProteinID:
BFO54895
LinkDB
All DBs
Position
complement(1887139..1890630)
Genome browser
AA seq
1163 aa
AA seq
DB search
MDLPKLIPGKRFTMPRPVGSADALLLARVAEREKAARRTIAIVTADATDAQRLIDEMAFF
APELRCALFPDWETLPYDTFSPHQDLISERLATLWRISQKDKDTGADVVLVPATTALYRV
APPSFLAAYTFHFKVKQKLDEAKFRAQLTLAGYSHVSQVVSPGEYAVRGGLIDLFPMGSP
VPYRVDLFDDEIDSIRTFDPDTQRSLYPVPEVRLLPGREFPMDDAARAKFRSRWRELLEG
DPTKSRIYKDMGNGVATAGIEYYLPLFFDETATVFDYLGEDATVVLHGDLEPAFQRFWQD
TKERFRLVQGDPDRPALPPESLFLGIEQFYTRANAHAQLALRPGVEDVADNPNFQKLGDL
AVVRGAEDPLARLHAHIRNTQHRVLLLAESDGRRESLLDFLRASQLNPPAFDSLAEFQGQ
ADEKVGIATAALAVGFAWTLEGIDFVTETELFAAGATTRRRKKQEQVSDVEALIKDLSEL
TLGDPVVHSAHGIGRYRGLIHMDVGQKNPDGTPAMQEFLHLEYADKAVLYVPVSQLQLIS
RYTGVSADEAPLHKLGSGQWEKAKRKAAEQVRDSAAELLNIYARRAAREGHAFRYSPQDY
EQFANDFGFEETADQNAAIHAVIQDMISPRPMDRLVCGDVGFGKTEVALRAAFVAVTGGK
QVAFLAPTTLLAEQHYQTLVDRFSKWPVKIAEVSRFRSGKEITAAIKGIGDGTVDIVVGT
HKLLSESTKFHNLGLLIIDEEHRFGVRHKEQMKQLRAEVDVLTLTATPIPRTLGMALEGL
RDLSVIATAPQRRLAIKTFVRNEGTGVIREAVLRELKRGGQCYFLHNEVETIENRRQKLE
EILPEARIAVAHGQMPERELEKVMRDFVAQRYNILLCSTIIETGIDVPTANTIIMSRADK
FGLAQLHQLRGRVGRSHHQAYAYLMVPDVDGLTKQAAQRLDAIQQMEELGSGFYLAMHDL
EIRGAGEVLGENQSGNMLEVGFQLYNEMLAEAVKSLKAGKEPDLLAPLSVTTDINLHAPA
LLPDDYCGDVHLRLSFYKKLATAKTADQIDALLEEIVDRFGKLPPQAQTLIDVHRLRVLS
QPYGVIKVDAAPGVTNITFRPQPPVDPMQIIHLIQKNRHIKLAGNEKLRIERELPEAKDR
AQMVRDVLRSLGQPLGATQGAPA
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atggacctccccaaactcatccccggcaaacgtttcaccatgccgcgccccgtgggcagc
gcggacgccctgctgctcgcgcgcgtcgcggagcgcgagaaggccgcccggcgcaccatc
gccatcgtcacggccgacgccaccgacgcgcagcgcctgatcgacgagatggcgttcttc
gcgccggaactgcgctgcgcgctgttccccgactgggaaacgctgccctacgacaccttc
tcgccccaccaggacctcatcagcgaacgcctggccacgctctggcgcatcagccagaag
gacaaggacaccggcgccgacgtggtgctggtgcccgccaccacggcgctctaccgggtc
gcgccgccctcgttcctggcggcctacaccttccacttcaaggtgaagcagaagctggac
gaggcgaagttccgcgcccagctcacgctggccggctacagccacgtctcgcaggtggtg
agccccggcgaatacgcggtgcgcggcggcctgatcgacctgtttcccatgggctcgccc
gtgccctaccgggtggacctgttcgacgacgagatcgactccatccgcaccttcgatccg
gacacgcagcgcagcctctacccggtgccggaagtgcgcctgctgcccggccgcgagttc
cccatggacgacgcggcccgggccaagttccgcagccgctggcgcgagctgctggagggc
gaccccacgaaaagccgcatctacaaggacatgggcaacggcgtggccaccgccggcatc
gagtactacctgccgctcttcttcgacgagacggccaccgtgttcgactatcttggagag
gacgccacggtggtattgcacggcgacctggagccggccttccagcgtttctggcaggac
acgaaggagcgcttccgcctggtgcagggcgaccccgaccggcccgcactgccgcccgaa
tcgctgttcctgggcatcgagcagttctacacccgcgccaacgcgcatgcgcagctcgcg
ctgcggccgggggtggaggacgtggccgacaacccgaacttccagaagctgggcgacctg
gccgtggtgcgcggcgccgaggatccgctggcgcgcctgcatgcccacatccgcaacacg
cagcaccgggtgctgctgctggccgagagcgacggccggcgcgagagcctgctggacttc
ctgcgcgcctcgcagctgaacccgcccgccttcgattcgctggccgagttccagggccag
gccgacgagaaggtcggcatcgccaccgccgcgcttgcagtgggcttcgcctggaccctg
gaaggcatcgacttcgtcaccgagaccgaactgttcgcggccggcgccaccacgcgccgg
cgcaagaagcaggagcaggtgagcgacgtcgaggcgctgatcaaggacctctcggaactc
acgctgggcgacccggtggtgcacagcgcgcacggcatcggccgctaccgcgggctgatc
cacatggacgtgggccagaagaaccccgacggcacgcccgcgatgcaggagttcctgcac
ctcgaatacgcggacaaggccgtgctgtacgtaccggtgagccagctccagctcatcagc
cgctacacgggcgtgtccgccgacgaggcgccgctgcacaagctgggcagcggccagtgg
gagaaggccaagcgcaaggctgccgagcaggtgcgcgattccgccgccgagctgctcaac
atctacgcccgccgcgcggcgcgcgagggccatgcgttccgctacagcccgcaggactac
gagcagttcgccaacgatttcgggttcgaggaaacggccgaccagaacgccgccatccac
gcggtgatccaggacatgatctcgccccgccccatggaccggctggtctgcggcgacgtg
ggcttcggcaagaccgaggtcgccctgcgcgccgcctttgtggcggtcacgggcggcaag
caggtggcgttcctcgcgccgaccacgctgctggccgagcagcactaccagacgctggtg
gaccgtttctccaagtggcctgtgaagatcgcggaggtctcgcgcttccgctcgggcaag
gagatcaccgcggccatcaagggcatcggcgacggcacggtggacatcgtggtgggcacg
cacaagctgctgtccgaatcgacgaagttccacaacctgggcctgctcatcatcgacgag
gagcaccgtttcggggtgcgccacaaggagcagatgaagcagctgcgtgccgaggtggac
gtgctcacgctcaccgccacgcccatcccgcgcacgctgggcatggcgctggaaggcctg
cgcgacctgtcggtgatcgccaccgcgccgcagcggcgcctggcgatcaagaccttcgtg
cgcaacgagggcacgggcgtgatccgcgaggcggtgctgcgcgaactgaagcgcggcggc
cagtgctacttcctgcacaacgaggtcgagacgatcgagaaccggcgccagaagctcgag
gagatattgcccgaggcccgcatcgccgtggcgcacggccagatgcccgagcgcgagctg
gagaaggtgatgcgcgacttcgtggcgcagcgctacaacatcctgctgtgctcgaccatc
atcgagaccggcatcgacgtgcccacggccaacaccatcatcatgagccgcgccgacaag
ttcggcctggcgcaattgcaccagctgcgcggccgcgtgggccgcagccaccaccaggcc
tatgcctacctgatggtgccggacgtggacggcctgaccaagcaggccgcgcagcggctg
gacgccatccagcagatggaggagctgggctcgggcttctacctcgccatgcacgacctg
gagatccgcggcgcgggcgaggtgctgggcgagaaccagagcggcaacatgctggaggtg
ggcttccagctctacaacgagatgctggccgaggccgtgaagtcgctcaaggccggcaag
gaacccgacctgctcgcgccgctgtcggtcaccacggacatcaacctgcacgcaccggcc
ctgctgcccgacgactactgcggcgacgtgcacctgcggctgtcgttctacaagaagctc
gccaccgcgaagaccgcggaccagatcgacgccctgctcgaagagatcgtggaccgcttc
ggcaagctgccgccgcaggcgcagacgctgatcgacgtgcaccggctgcgcgtgctgtcg
cagccctacggggtgatcaaggtggatgcggcaccgggcgtgacgaacatcacgttccgg
ccccagccgccggtggacccgatgcagatcatccacctgatccagaagaataggcacatc
aagctcgcgggcaacgaaaagctgcgcatcgagcgcgaactgccggaagcgaaggaccgg
gcgcagatggtgcgcgacgtgctgcgcagcctgggccagcccctgggggccacgcagggc
gctccggcctga
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