Acidovorax sacchari: AVXHC19_18370
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Entry
AVXHC19_18370 CDS
T10802
Name
(GenBank) hypothetical protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
asah Acidovorax sacchari
Pathway
asah03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asah00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AVXHC19_18370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asah03019
]
AVXHC19_18370
Enzymes [BR:
asah01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AVXHC19_18370
Messenger RNA biogenesis [BR:
asah03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AVXHC19_18370
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
Fe-ADH
UvrD-helicase
Utp25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BFO55034
LinkDB
All DBs
Position
complement(2032650..2034455)
Genome browser
AA seq
601 aa
AA seq
DB search
MTFDELNLAPAILKAVHEQGYETPTPIQAQAIPAVLAGHDLLAGAQTGTGKTAAFTLPML
HRLTQGGTARPAGGIRALVLTPTRELAAQVEENLRAYAKHLDVKSTVIFGGVGMNPQIDR
IKRGVDILVATPGRLLDLQQQGFLDLSKVEILVLDEADRMLDMGFIHDVKKVLALVPRDK
QSLLFSATFSDEIRELAGTLLKNPQSIQVTPRNTTVQRITQVIHPVGRGKKKQVLLHIIQ
QHNWSQVLVFTRTKFGANNVAEFLTKNGVTAMALHGNKSQSARTQALAGFKSGDIRALVA
TDIAARGIDIDELPHVVNYEIPNVPEDYVHRIGRTGRAGASGEAVSLVCMDEEGFMMEIE
RFTKQEIPVQVLEGFGPEEGEKAEPIAMGRQTIWGGAGKPPSREVMQAAAKAARSEMMER
IRTNKATQGERSGGGKSGGRGAQGQGEGGGNGGQKPQRGRGGAQQGQGQGNGPRAAHPGN
GGHPRSGNGGGGNGGGRGSRPPRGEGGHRSDDLQPRRENAHLGTQLGTHLGPTRHGSGGG
QPDPMRTSVDSMSSGRRGGGGFRSGGGGGGGYGGGGGGGGGYGGGRGGNRGPRGGGGGYG
R
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atgacttttgacgaactgaatctggccccggccattctgaaagccgtgcacgagcagggc
tacgagacccccacccccatccaggcccaggccatccccgccgtgctcgcagggcacgac
ctcctcgccggagcccagaccggtaccggcaagacggcggccttcacgctgccgatgctg
caccgcctcacgcagggcggcaccgcccggcccgccggcggcatccgcgccctggtgctc
acccccacgcgtgaactggccgcgcaggtcgaggaaaacctccgcgcctatgccaagcac
ctggacgtgaagtccaccgtgatcttcggcggcgtgggcatgaacccgcagatcgaccgc
atcaagcgcggcgtggacatcctggtggccaccccaggccgcctgctggacctgcagcag
cagggcttcctggacctctccaaggtcgagatcctggtgctggacgaagccgaccgcatg
ctggacatgggcttcatccacgacgtgaagaaggtgctggccctggtgccccgcgacaag
cagagcctgctgttctcggccaccttcagcgacgagatccgcgaactggccggcacgctg
ctcaagaacccgcagagcatccaggtcactccgcgcaacaccaccgtgcagcgcatcacc
caggtgatccaccccgtgggccgcggcaagaagaagcaggtgctactgcacatcatccag
cagcacaactggagccaggtgctggtcttcacccgcaccaagttcggcgccaacaacgtg
gccgaattcctcaccaagaacggcgtgacggccatggcgctgcacggcaacaagagccag
agcgcccgcacccaggccctggccggcttcaagagtggcgacatccgtgccctggtggcc
accgacatcgccgcgcgcggcatcgacatcgacgagctgccgcacgtcgtcaactacgag
atccccaacgttcccgaggactatgtccaccgcatcggccgcaccggccgcgcgggcgcc
agcggcgaggccgtgagcctggtctgcatggacgaggaaggcttcatgatggagatcgag
cgcttcaccaagcaggagatcccggtgcaggtcctcgagggcttcggcccggaggaaggt
gagaaggcggagccgatcgccatgggccgccagaccatctggggcggcgcgggcaagccg
ccgagccgcgaggtcatgcaggcggccgccaaggccgcgcgcagcgagatgatggaacgc
atccgcaccaacaaggccacccagggtgaacgcagcggcggcggcaagtccggcggccgc
ggcgcgcaaggccagggcgaaggcggcggcaacggtggccagaagcctcagcgcggccgc
ggcggcgcgcaacaaggccagggccagggcaacggcccgcgcgcggcgcatcccggcaac
ggcggccatccgcgctccggcaacggtggcggcggcaatggcggcgggcgcggcagccgc
cccccgcgtggcgaaggcggacaccgctccgacgacctgcagccgcggcgcgagaacgcc
cacctgggcacgcagctcggcacgcacctgggccccacgcgccacggcagcggcggcggc
cagcccgacccgatgcgcaccagcgtggacagcatgtccagcggccggcgcggcggcggc
ggcttccgcagcggtggcggcggcggcggtggctatggcggcggcggtggtggtggtggc
ggctacggcggtggccgcggcggcaaccgcggcccgcgtggcggcggtggcggctacgga
cgctga
DBGET
integrated database retrieval system
