Acidovorax sacchari: AVXHC19_21330
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Entry
AVXHC19_21330 CDS
T10802
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
asah Acidovorax sacchari
Pathway
asah03030
DNA replication
asah03430
Mismatch repair
asah03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
asah00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AVXHC19_21330 (dnaE)
03430 Mismatch repair
AVXHC19_21330 (dnaE)
03440 Homologous recombination
AVXHC19_21330 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
asah03032
]
AVXHC19_21330 (dnaE)
03400 DNA repair and recombination proteins [BR:
asah03400
]
AVXHC19_21330 (dnaE)
Enzymes [BR:
asah01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
AVXHC19_21330 (dnaE)
DNA replication proteins [BR:
asah03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
AVXHC19_21330 (dnaE)
DNA repair and recombination proteins [BR:
asah03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
AVXHC19_21330 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
BFO55330
LinkDB
All DBs
Position
2363242..2366787
Genome browser
AA seq
1181 aa
AA seq
DB search
MFVHLRLHTEFSVVDGTARIDEVAKAASKDGQPALAITDLHNLFGAIKFYKEARGKGVKP
VLGAEVSIEPETAGNPPGRILLLAQGRQGYLNLCEMLARAWTRNVVKNVPLCTWEWLEEL
GGDLIALSGAQAGPVGQAFTRGDDAGAARVALRLAGLFPHRFYLELQRAGRPEDEPQVVA
AVQLAARLNLPVVATQPTQFLTADDYEAHEARVCIAEGEILANPRRVRRFTREQYFKSSA
QMEALFADVPTAIANTLEIARRCSLTLVLGKPRLPDFPTPNGMPIDEYFRYASFEGLEER
LKHLFRNEAERDRQRPRYVERLEFELATILKMGFPGYFLIVGDFIQWAKENGCPVGPGRG
SGAGSLVAYALKITDLDPLQYNLLFERFLNPERVSMPDFDIDFCQSNRDRVIDYVKDKYG
KNAVSQIATFGTMAAKAAIRDVGRVMDMSYTFCDGISKLVPGKPGMSYTLAYPPEVKKEG
DKNNYALELEPMLYERVRKEEDVKTVIEMAQKLEGMTRNIGMHAGGVLIAPGKLTDFCPL
YQQPGSESAVSQYDKDDVEAIGLVKFDFLGLATLTILEIAREFIMKRHKGQENFAFENIP
LDDAPTYRLFSEGKTEAVFQFESRGMQGMLKEARPSRLEDLIALNALYRPGPMDLIPTFV
NRKHGKEPVEYPHPLVEPVLAETYGIMVYQEQVMQTAQVLGGYSLGGADMLRRAMGKKKA
EEMAEHREIFRKGAAEKGIGQDKADEVFDLMEKFAGYGFNKSHAAAYSLLAYHTGWLKVH
YTAEFFCANMTVEMDDTDKLKVLYEDAMKMGLTFEPPDVNRGMYRFEPVTDKVIRYGLGA
VKGTGQQAIEAIIAAREGRGVGPRGETKGPFASLFDFCARVDRTRLNKRTLEALIKAGAF
DAIEMNRASLVASIDRAFDFANSLIANANQGGLFDMMGDDSHGSSTQDPALVEMLPWGVK
ERLTQEKTAVGFYLSGHLFDEVEKEVRRFIRTPIEELADSREPQIMAGIVSDFRVINGQR
GRLALFKLDDKSAMIEASADENVINAHRDLLKEDEFVVLLGRLQLDHFSGGLRVKVMQGW
DLASARAKFGRYLQVAVGDCAPDVQRLVREFPPKRQETPEGEVLVHGLRVRMGVRCRSEG
QEAVAELQLGEGSRFFPSDAALAAWSAEAGSGVVNVVYDAG
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atgtttgtccatttgcgcctgcacaccgagttttccgtcgtcgacggcaccgcccgcatc
gacgaagtggccaaggcggcctcgaaagacggccagcccgccctcgcgatcaccgatctc
cacaaccttttcggcgccatcaagttctacaaggaagcccgcggcaaaggcgtcaagccc
gtgctgggcgcggaagtcagcatcgagcccgagaccgccggcaacccgcccggccgcatc
ctcctgctggcccagggccggcagggctacctgaacctgtgcgagatgctggcgcgcgcc
tggacgcgcaatgtcgtgaagaacgtgccgctgtgcacctgggagtggctggaagagctg
ggcggcgacctcatcgcgctgtccggcgcgcaggcgggccccgtgggccaggccttcacg
cgcggcgacgacgccggcgcggcgcgcgtggcgctgcggctggccgggctgttcccgcac
cgcttctacctggagctgcagcgggccgggcggccggaggacgagccccaggtggtggcg
gccgtgcagctggcggcgcgcctcaacctgcccgtggtggcgacccagcccacccagttc
ctcaccgccgacgactacgaggcccacgaggcccgggtctgcatcgcggaaggggagatc
ctcgcgaacccgcgccgggtacgccgcttcacccgggagcagtacttcaagtcgagcgcc
cagatggaggcactgttcgcggacgtgcccacggccatcgccaacacgctggagatcgcc
aggcgctgcagcctgacgctggtgctcggcaagccgcgcctgccggacttccccacgccc
aacggcatgccgatcgacgagtatttccgctatgcgtcgtttgaagggctggaagagcgc
ctgaagcacctcttccgcaacgaggccgagcgcgacaggcagcgcccgcgctacgtggag
cggctggagttcgagctggccaccatcctgaagatggggttccccggctacttcctcatc
gtgggcgacttcatccagtgggccaaggagaacggctgcccggtgggcccgggccggggg
tccggcgccggctcgctcgtggcctatgcgctcaagatcaccgacctggacccgctgcag
tacaacctgctgttcgagcgcttcctgaacccggagcgggtgtccatgcccgacttcgac
atcgatttctgccagtccaaccgcgaccgggtgatcgactacgtgaaggacaagtacggc
aagaacgccgtgagccagatcgccaccttcggcaccatggcagccaaggccgccatccgc
gacgtgggccgcgtcatggacatgagctacaccttctgcgacggcatctccaagctcgtg
ccgggcaagcccggcatgtcctacacgctggcctatccgcccgaagtgaagaaggaaggc
gacaagaacaactacgcgctggaactggagcccatgctctacgagcgcgtgcgcaaggaa
gaggacgtcaagaccgtcatcgagatggcgcagaagctcgagggcatgacccgcaacatc
ggcatgcacgccgggggcgtgctgatcgcaccgggcaagctcaccgatttctgcccgctc
taccagcagccgggcagcgagtcggccgtgagccagtacgacaaggacgacgtggaggcc
atcggcctcgtgaagttcgacttcctgggcctggccacgctgacgatcctggagatcgcg
cgcgagttcatcatgaagcgccacaaggggcaggagaacttcgcgttcgagaacatcccg
ctcgacgacgcgccgacctaccggctgttctccgaaggcaagacggaagccgtgttccag
ttcgaatcgcgtggcatgcagggcatgctgaaggaagcgcgcccgagccggctggaagac
ctgatcgccctgaacgcgctctaccgcccgggcccgatggacctgatccccaccttcgtg
aaccgcaagcacggcaaggaaccggtggagtatccgcacccgctggtggaacccgtgctg
gccgagacctacgggatcatggtctaccaggagcaggtgatgcagaccgcccaggtgctg
ggcggctacagcctcggcggcgccgacatgctgcgccgggccatgggcaagaagaaggcc
gaggagatggccgagcaccgcgagatcttccgcaagggcgcggccgagaagggcatcggc
caggacaaggccgacgaggtgttcgacctgatggagaagttcgcgggctacggcttcaac
aagtcgcacgccgccgcctactccctgctggcctaccacaccggctggctcaaggtgcac
tacacggccgagttcttctgcgccaacatgacggtggaaatggacgacaccgacaagctg
aaggtgctgtacgaagacgccatgaagatggggctgaccttcgagccgccggacgtgaac
cgcggcatgtaccgcttcgagccggtgacggacaaggtgatccgctacgggctgggcgcg
gtcaagggcaccggccagcaggcgatcgaggcgatcatcgccgcgcgcgagggccgcggc
gtgggcccgcgcggcgaaacgaagggacctttcgccagcctgttcgacttctgcgcgcgg
gtggaccgcacccggctcaacaagcgcacgctggaggcgctgatcaaggcgggcgcgttc
gacgccatcgagatgaaccgcgcgtcgctcgtggcgtcgatcgaccgggccttcgacttc
gccaactccctgatcgccaacgccaaccagggcggcctgttcgacatgatgggcgacgac
tcgcacggctccagcacccaggatccggccctggtggagatgcttccctggggcgtgaag
gagcggctcacgcaggagaagaccgccgtcggcttctacctgtcgggccacctgttcgac
gaggtggaaaaggaggtccgccgcttcatccgcaccccgatcgaggagctggccgacagc
cgggagccgcagatcatggcgggcatcgtgagcgacttccgggtgatcaacgggcagcgg
gggcgcctggcgctgttcaagctggacgacaagtccgccatgatcgaggcctcggccgac
gagaacgtgatcaatgcccaccgcgacctgctcaaggaggatgaattcgtggtgctgctg
gggcgcctgcagctcgaccatttcagcggcggcctgcgcgtcaaggtgatgcagggctgg
gatctcgccagcgcgcgggccaagttcggccgctacctgcaggtggcggtgggcgactgc
gcgccggacgtgcagcgcctggtgcgcgagttccccccgaagcgccaggaaacgcccgag
ggcgaggtgctggtgcacggcctgcgcgtgcgcatgggcgtgcgctgccgctccgagggg
caggaggccgtggcggaactgcaactcggggagggcagccggttcttcccctcggacgcg
gccctggcggcctggagcgcggaggccggcagcggggtggtgaacgtcgtgtacgacgcc
ggctga
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integrated database retrieval system
