Acidovorax sacchari: AVXHC19_21420
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Entry
AVXHC19_21420 CDS
T10802
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
asah Acidovorax sacchari
Brite
KEGG Orthology (KO) [BR:
asah00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
asah03000
]
AVXHC19_21420
Transcription factors [BR:
asah03000
]
Prokaryotic type
Helix-turn-helix
Other families
AVXHC19_21420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
GAF
Sigma54_activ_2
AAA_lid_14
HTH_8
PAS_4
HTH_30
HTH_23
AAA_5
Mg_chelatase
HTH_22
HTH_Tnp_ISL3
HTH_29
HTH_AsnC-type
HTH_28
AAA
HTH_7
HTH_20
AAA_16
HTH_50
P22_Cro
AAA_2
HTH_38
RsmI_C
TetR_N
HTH_1
HTH_17
HTH_24
HTH_IclR
HTH_11
TrmB
HTH_Tnp_1
Motif
Other DBs
NCBI-ProteinID:
BFO55339
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Position
2377655..2379778
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AA seq
707 aa
AA seq
DB search
MQSSLHGGEAAQAAAFAPLPSARVIAESHERSRSFGLQRHASADLQPLAPDALAWAVARN
DALCAHALPVMETLSAQIAGTQSMVLLTDAQGVVLHALGDEEFLGRAHRVALRPGGTWSE
RSKGTNAIGTALALGDAVQVNGDEHFLAANQFLTCSCAPICDPQGQVIGALDVSGDRHQQ
SAHTLALVRMSARMVENHLFGKVYEDAVRLRFHARPEFLGTLVEGLAAFTPEGRFLAANR
SGQFQLGMSANALQAQTFPSLFGMPMSALLAHARGAMPRPLQLALPGGVVVNAMVEFRPK
GAAALGWMVQGRDEDAPTAAPAAPASATATRPRPVAPVPAGGPRLSGLRYLDTGDAQLAQ
VIDRVSRVLGSDVPMLILGETGTGKELLARAIHQDGPRARGPFVAVNCASIPETLIEAEL
FGYEEGAFTGARRKGSVGKIAQAHGGTLFLDEIGDMPLAMQARLLRVLQERTVAPLGSAR
QIPVDVHVLCATHRNLRDMMARGVFRDDLYYRLNGLVVRLPALRERSDLRVIVQRLLQAQ
DRERAAEGSAPGWPRPRRTAPLRVSPRAMELFLRHCWPGNLRQLSNALRTAALMAGDADE
IDIGHLPEDLFDEVPPAAASAAPVPAGPQGDAGASVWDTGPCPPGRSAAHRPEPAAVRSW
DETVEEALRHALSVHGGNVSAVARALGVSRNTVYRRLKAMDGTAPHH
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atgcagagctccctccatggcggggaggcggcgcaggccgccgccttcgcgccgctgcct
tcggcccgcgtgatcgccgagtcgcacgagcgctcccgctccttcggcctgcaacggcac
gcgtccgccgacctccagcccctggcgcccgacgcgctcgcctgggccgtggcgcgcaac
gacgcgctttgcgcgcatgcgctcccggtcatggaaaccctctcggcccagatcgcgggc
acgcagagcatggtgctgctcaccgacgcgcagggcgtggtgctgcacgccctgggcgac
gaggaattcctcgggcgcgcgcaccgggtcgcgctgcggcccgggggcacctggtccgag
cgcagcaagggcacgaatgccatcggcacggccctggccctgggcgatgcggtgcaggtg
aacggcgacgagcatttcctggccgccaaccagttcctcacctgctcctgcgcacccatc
tgcgatccgcaggggcaggtgatcggcgcgctggacgtgagcggcgaccgccaccagcag
agtgcccacacgctggccctggtgcgcatgtccgcgcgcatggtcgagaaccatctcttc
ggcaaggtctatgaggacgccgtgcggctgcgcttccatgcgcgcccggagttcctgggc
acgctggtggaggggctggccgcgttcacgccggagggccgtttcctcgcggccaaccgc
agcgggcagttccagctcggcatgtcggcgaacgcattgcaggcgcagaccttcccgtcg
ctcttcggcatgccgatgagcgcgctgctggcccatgcgcgcggcgccatgccccggccg
ctgcagctcgcgctgcccggcggggtggtggtcaatgcgatggtggaattccgcccgaag
ggggcggcggccctcggctggatggtgcaggggcgcgacgaggatgcgcccacggccgcg
cccgctgcaccagcttccgccacggccacccggccgcggcccgtcgccccggtgccggcc
ggcggtccgcggctgtccggcctgcgctacctggatacgggcgatgcgcagctggcgcag
gtgatcgaccgcgtctcgcgcgtgctgggcagcgacgtgcccatgctcatcctcggcgag
accggcacgggcaaggaactgctggcccgcgccatccaccaggacggcccgcgcgcgcgc
gggcccttcgtggcggtgaactgcgcatccatcccggaaactctgatcgaggcggaactg
ttcggctacgaggagggcgccttcacgggcgcgcggcgcaagggcagcgtgggcaagatc
gcccaggcccacggcggcacgctgttcctggacgagatcggcgacatgccgctggccatg
caggcccggctgctgcgcgtgctgcaggagcgcaccgtggcgccgctcggctcggcgcgg
cagatcccggtggatgtgcacgtgctttgcgccacccaccgcaacctgcgcgacatgatg
gcccggggggtgttccgcgacgatctctactaccggctcaacgggctggtggtgcgcctg
ccggcgctgcgcgagcgctcggacctgcgcgtcatcgtgcagcgcctcttgcaggcgcag
gaccgcgagcgggctgccgaaggctccgcgcccggctggccgcgaccgcgccggacggcg
cccctgcgggtctcgccacgggccatggagctgttcctgcggcactgctggcccggcaac
ctccgccagctctcgaatgcgttgcgcacggcggcgctgatggccggtgatgcggacgag
atcgacatcgggcatctgccggaggacctgttcgatgaagttcctcctgctgccgcttcc
gcggccccggtgcccgcaggtccccagggcgatgccggtgcgtcggtgtgggataccgga
ccatgcccgccgggccgcagcgctgcacaccggcccgagccggccgcggtgcgttcatgg
gatgagaccgtggaagaggcactgcgccatgcgctgtcggtgcatggcggcaacgtatcc
gccgtggcgcgggccctgggggtgtcgcgcaatacggtgtaccggcggctgaaggcgatg
gacgggacggcccctcaccattga
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