Acidovorax sacchari: AVXHC19_24340
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Entry
AVXHC19_24340 CDS
T10802
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
asah Acidovorax sacchari
Pathway
asah03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asah00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AVXHC19_24340 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asah03019
]
AVXHC19_24340 (rnr)
03016 Transfer RNA biogenesis [BR:
asah03016
]
AVXHC19_24340 (rnr)
Enzymes [BR:
asah01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
AVXHC19_24340 (rnr)
Messenger RNA biogenesis [BR:
asah03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AVXHC19_24340 (rnr)
Transfer RNA biogenesis [BR:
asah03016
]
Prokaryotic type
tRNA degradation factors
AVXHC19_24340 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
BFO55631
LinkDB
All DBs
Position
2715722..2718037
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AA seq
771 aa
AA seq
DB search
MYIKKTKAVANVAHSDDEIEGSVQGHRDGHGFVQRDDGDADIYIPANEMRAVLHKDRVRV
RIARHDRRGRPEGRIVEIIERPQHPIIGRLLQESGVWLVAPEDKRYGQDVLIPKGATGSA
KTGQVVVVELTEPPALFGQPVGRVTEVLGEVDDPGMEIEIAVRKYGVPHEFSQEALAQAK
ALPDKVRAQDKRHRIDLTDVPLVTIDGEDARDFDDAVYCEPARVGRAKGWRLLVAIADVS
HYVETGSPIDVDAYDRATSVYFPRRVIPMLPEKLSNGLCSLNPEVERLCMVCDMLVTAKG
EVHAYQFYPAVMFSHARFTYTEVAAILANTRGPEATKRRARVQDLLNLHDVYRALLSSRH
ARGAVDFETTETQIVCDDNGRIEKIVPRTRNDAHRLIEEAMLAANVCSADFIAQGGQPGL
YRVHEGPTPEKQEILRSYLKAMGVGMTIGDDPKPGDFQAIAEATKDRPDAQQIHTMLLRS
MQQAIYTPVNSGHFGLAYEAYTHFTSPIRRYPDLLVHRVIKAILGQTKYRLPALPVPGEA
HAKLAKRLAARVPAPTQQPRKPLSASAARELQAWEAAGLHCSANERRADEASRDVEAWLK
CKYMREHLGEEFSGLVTAATSFGIFVTLDAMYVEGLVHITELGGEYFKFDEARQELRGER
TGIRYAIGTRVRVQVSRVDLDGRRIDFRLVREGEESLSPARASRGRGGREPSEPMLPASA
DGAGAERSRNKARKGASRAARPQDAPAAPRKAAAKGSGRRSGAAKRGKSRR
NT seq
2316 nt
NT seq
+upstream
nt +downstream
nt
ttgtatatcaaaaaaaccaaagccgttgcaaacgtcgcgcactccgatgacgaaatcgaa
ggcagcgtgcagggccaccgcgacggccacggattcgtgcagcgcgacgacggcgatgcc
gacatctacatccccgcgaacgagatgcgggctgtgcttcacaaggaccgcgtgcgcgtg
cgcatcgcgcggcacgaccggcgcggccggcccgagggccgcatcgtcgagatcatcgaa
cgcccccagcacccgatcatcgggcgcctgctgcaggaaagcggcgtgtggctggtggcg
ccggaagacaagcgctacggccaggatgtgctgatccccaagggcgctaccggctcggcc
aagaccgggcaggtcgtggtggtggaactgacggagccgcccgcgctgttcgggcagccc
gtgggccgtgtcacggaagtgctgggggaggtggacgacccgggcatggagatcgagatc
gccgtgcgcaaatacggcgttccgcacgagttctcgcaggaggcgctggcgcaggccaag
gccctgcccgacaaggtgcgcgcgcaggacaagcgccaccgcatcgacctgaccgacgtg
ccgctggtgaccatcgacggcgaagatgcccgcgacttcgacgatgcggtgtattgcgag
ccggcgcgcgtcggccgcgccaagggctggcgcctgctggtcgcgatcgccgacgtgagc
cactatgtggagacgggcagccccatcgacgtggacgcctacgaccgggccacgagcgtc
tatttcccgcgccgcgtgatcccgatgctgcccgagaagctgtccaacgggctgtgctcg
ctcaatccggaggtggagcggctgtgcatggtgtgcgacatgctggtcaccgccaagggc
gaagtgcatgcctaccagttctacccggcggtcatgttcagccacgcgcgcttcacctat
acggaagtggccgcgatcctcgcgaacacgcgggggccggaggcgacgaagcgccgggcg
cgcgtgcaggatttgctgaacctgcacgacgtgtaccgcgcgctgctgtcgtcgcggcac
gcgcgtggggcggtggatttcgagaccaccgagacgcagatcgtctgcgacgacaacggc
cgcatcgagaagatcgtgccgcgcacgcgcaacgatgcccacaggctgatcgaggaggcc
atgctcgcggccaatgtgtgcagcgcggacttcatcgcgcagggtggccagcccgggctg
taccgcgtgcacgaaggccccacgccggagaagcaggaaatcctgcgcagctacctgaag
gccatgggggtaggcatgacgatcggcgacgatccgaagcccggcgacttccaggccatc
gccgaggccacgaaggaccgtccggacgcgcagcagatccacacgatgctgctgcggtcc
atgcagcaggccatctacacgcccgtgaacagcggccatttcgggctggcctacgaggcg
tacacgcatttcaccagcccgatccgccgctatcccgatctgctggtccaccgcgtcatc
aaggccatcctgggccagaccaagtaccggctgccggcgcttcccgtgcccggcgaagcc
catgccaagctcgccaagcggctggccgcacgcgtgcccgcgcccacccagcagccgcgc
aagccgctctccgcctcggcggcccgggaactgcaggcctgggaggccgcgggcctgcat
tgcagcgccaatgaacgccgcgcggacgaggccagccgcgacgtcgaggcctggctcaag
tgcaagtacatgcgcgagcacctcggcgaggagttcagcggcctggtcacggccgcgacc
agcttcggcatcttcgtgacgctggacgcgatgtacgtcgaggggctggtgcacatcacg
gagctgggcggcgagtatttcaagttcgacgaggcgcgccaggagctgcgcggcgaacgc
acgggcatccgctatgccatcggcacgcgggtgcgcgtgcaggtcagccgcgtggacctg
gatgggcgacgcatcgacttccggctggtgcgcgagggcgaggagtcgctgtcacccgcg
cgcgcttcccgcggccgcggagggcgcgagccgtcggagcccatgctcccggcatccgcc
gatggagcgggggcagagcgcagtcgcaacaaggcccgcaagggcgcttcgcgggccgcc
cgcccgcaggacgcccccgcggcgccgcgcaaggcggcggccaagggttccggacgccgc
tccggggccgccaagcggggcaagtcgcgccgctga
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