Acidovorax sacchari: AVXHC19_27680
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Entry
AVXHC19_27680 CDS
T10802
Name
(GenBank) hypothetical protein
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
asah Acidovorax sacchari
Brite
KEGG Orthology (KO) [BR:
asah00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asah03019
]
AVXHC19_27680
Enzymes [BR:
asah01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AVXHC19_27680
Messenger RNA biogenesis [BR:
asah03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
AVXHC19_27680
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
AAA_22
NACHT
WHD_HA2
T2SSE
AAA_19
nSTAND3
AAA_23
SRP54
nSTAND_NTPase5
PhoH
Motif
Other DBs
NCBI-ProteinID:
BFO55965
LinkDB
All DBs
Position
complement(3107282..3111445)
Genome browser
AA seq
1387 aa
AA seq
DB search
MTGSAPPKSPIPQPAPSAPPRREAPAAPLRIEFPPGLPVSGKREEIMAAMQAHQVIIVCG
ETGSGKTTQLPKIALALGRGKCNARPGEKGRLIGHTQPRRIAASSVAKRIAEELQTPLGD
VVGYKVRFQDRLSRDASVKLMTDGILLAETQTDPLLTAYDTIIIDEAHERSLNIDFLLGY
LRQILPRRPDLKIVVTSATIDAERFAKHFESAKGPAPVIYVSGRTFPVEQRYRPFEESRD
YGLNEAISDGVDELWAGNAAGDILVFLPGEREIREAADHLRKHLAHQPVMRGAEVLPLFA
RLSQAEQDRIFEGHTGRRIVLATNVAETSLTVPGIRYVIDAGTARVKRYSFRSKVEQLLI
EPVSQAAANQRAGRCGRVANGICIRLYDEPDFNSRPRFTDPEILRSSLAGVILRMKSLHL
GDVAQFPFIEAPSGRAIADGYQLLAELGAVDDANELTPMGVELSRLPLDPRVGRMILEAR
DRQALDEVLVIASALSVQDVRDRPLEAQQQADQAHAKFDDEKSEFSGYLKLWKWINEARG
GAPSLPSARAQRDAARKGAPSQAVLPVAQRQARGSADAAAPAVAAAASVPASAPTHKLSN
RQYESLLRQNFISVRRLREWRDIHTQLLTVVTEHRWRLNTQPASYEQIHRSMLAGLLGNI
GVKSEEEDWYLGARGIKFYKHPGAHLSKKPGRWIVAAELVETTRLFGRGIAAIEPQWIEE
MGGHLLKKQMLDPHWERKAAQVTALERATLYGIVIYNNRRVNFGKVDPRTAREIFLREAL
VGDQWPQDWERRLPFLTANRKLIAKVEELEHKSRRQDVLVDEELIYAFYDQQVPADICTG
ADFESWYREASRVKPDLLKLTRDELMRHEAAGITTSAFPRVVRLGGVDCAATYLHEPGDP
RDGVTVTVPLFVLNQVSEERCEWLVPGMLKDKIQALLKSLPQRPRSRFVPLPDNAARLAE
LLGTPERFGQGSLVDVLLKQVRDETSLDVKRADFKLDMLSPHLFMNFRVVHEDGRQLGQG
RNLGALKAEWGAKARGAFQALAGLKLGGAATDAERSAAPAGDVPAARAGQGEAHGRHADG
RAASAAGKPASAGPAAAPAPAAVPAGQRYTAWTFGELPELMEIRKGGQTLIGFPALIDGG
DAVTIEVFDEPGVAAARHRAGLRRLFALQIKDALKYLEKNIPDMQKMAVAYMPLGTQEEL
RAQIIDVALDRAFLVDPLPTTEADFQRRVQEGRGRLTLIANEVARLAGAILLEYAAAARK
IKDTKGAPEATQDAQQQLQRLIPKNFLAVAPWSQLAHFPRYLKAITLRLDKVRADPARDA
TRLAELRPQEQRYWRLVAERKGQVDARMQEFRWLLEELRVSFFAQELRTPQPVSVKRLDK
LWAQINS
NT seq
4164 nt
NT seq
+upstream
nt +downstream
nt
atgacaggttccgcgcccccgaaatcccccatcccccagcccgccccgtccgcaccgcca
cgccgtgaggccccggccgcaccgctgcgcatcgagttcccgcccggcctgccggtctcg
ggcaagcgcgaagagatcatggccgcgatgcaggcccaccaggtcatcatcgtctgcggc
gagaccggctcgggcaagaccacgcagctgcccaagatcgcgctggcgctcggccgcggc
aaatgcaacgccaggccgggcgagaagggccgcctgatcggccatacgcagccgcggcgg
atcgcggccagcagcgttgccaagcgcatcgccgaagagctgcagacgccgctcggcgac
gtcgtgggctacaaggtgcgcttccaggaccgcctgtcgcgcgatgcctccgtcaagctc
atgacggacggcatcctgctcgccgagacgcagaccgacccgctgctgacggcctacgac
acgatcatcatcgacgaggcgcacgagcgcagcctgaacatcgacttcctgctcggctac
ctccgccagatcctgccgcgccggcccgacctgaaaatcgtggtcacctcggccaccatc
gatgccgagcggttcgcgaagcacttcgagtcggcgaaggggcctgcacccgtcatctac
gtgtccggccgcaccttcccggtggagcagcggtaccggcccttcgaggaaagccgcgac
tacggcttgaacgaagccatctccgacggcgtggacgagctctgggcgggcaacgccgcg
ggcgacatcctggtcttcctgccgggcgagcgcgagatccgcgaggcggccgaccacctg
cgcaagcacctggcccaccagccggtgatgcgcggcgccgaagtgctgccgctgttcgcg
cgcctctcgcaggccgagcaggaccgcatcttcgaaggccacaccggccgccgcatcgtg
ctggccaccaacgtggccgagacatcgctcacggtgccgggcatccgctacgtgatcgac
gccggcaccgcgcgcgtgaagcgctacagctttcgcagcaaggtcgagcaactgctgatc
gagcccgtgagccaggcggcagccaaccagcgggcgggccgctgcggccgcgtggccaac
ggcatctgcatccggctctacgacgagcccgacttcaacagccggccgcgcttcaccgac
ccggaaatcctgcgctcctcgctggccggtgtgatcctgcgcatgaagtcgctgcacctg
ggcgacgtggcgcagttcccgttcatcgaggcaccctcgggccgcgcgatcgccgacggc
taccagctgctggccgaactgggcgcggtggacgatgccaatgaactcacgcccatgggc
gtggaactctcgcgactgccgctcgacccgcgcgtgggccgcatgattctcgaggcgcgc
gaccgccaggcactggacgaagtgctggtgatcgcctcggccctgtcggtgcaggacgtg
cgggaccggccgctcgaagcccagcagcaggccgaccaggcccatgccaagttcgacgac
gagaagagcgaattcagcggctacctcaagctctggaagtggatcaacgaggcccgcggc
ggcgcgccgagcctgccgtcggcacgggcgcagcgcgatgccgcgcgcaagggggcaccc
tcgcaggccgtgctgcccgtggcgcagcgccaggcacgcggcagtgccgacgcagccgcg
cccgcagtggccgccgcggcgtccgtgccggcctccgcacccacccacaagctcagcaac
cggcagtacgaatcgctgctgcgccagaacttcatcagcgtgcggcgcctgcgcgaatgg
cgcgacatccacacgcaattgctcaccgtggtcaccgagcaccgctggcgcctcaacacc
cagccggccagctacgagcagatccaccgctccatgctcgccgggctgctgggcaacatc
ggcgtgaagagcgaggaggaagactggtacctcggcgcgcgcggcatcaagttctacaag
catcccggggcgcacctgtcgaagaagcccgggcgctggatcgtggcggcggaactggtg
gagaccacgcgcctcttcgggcgcggcatcgctgccatcgagccgcagtggatcgaggag
atgggcggccacctgctcaagaagcagatgttggacccgcactgggagcgcaaggccgcg
caggtgacggcgctggagcgcgccacgctctacggcatcgtcatctacaacaaccgccgc
gtgaatttcggcaaggtggacccgcgcaccgcccgggaaatcttcctgcgcgaggcgctg
gtgggcgaccagtggccgcaggactgggagcggcgcctgccgttcctgacggccaaccgc
aagctgatcgccaaggtggaggagctggagcacaagtcgcggcgccaggacgtgctggtg
gacgaagagctcatctacgccttctacgaccagcaggtgcccgccgacatctgcaccggc
gccgatttcgaatcctggtaccgcgaggccagccgcgtgaagccggacctgctcaagctc
acgcgcgatgagctgatgcgccacgaggccgccggcatcaccaccagcgccttcccgcgc
gtggtgcggctgggcggcgtggactgcgcggccacctacctgcacgaacccggcgatccg
cgcgatggcgtcaccgtcacggtgccgctcttcgtgctcaaccaggtcagcgaagagcgc
tgcgaatggctggtgccgggcatgctcaaggacaagatccaggcactgctcaagagcctg
ccgcagcgcccgcgcagccgcttcgtgcccttgccggacaacgctgcgcgcctggccgaa
ctgctgggcacgcccgagcgcttcgggcagggcagcttggtggacgtgctgctcaagcag
gtgcgtgacgagacctcgctcgacgtgaagcgggcggatttcaagctcgacatgctgagc
ccgcacctgttcatgaacttccgcgtggtgcacgaggatggccggcagctcggccagggg
cgcaatctgggcgcactcaaggccgaatggggcgccaaggcccggggcgcgttccaggcc
ctggcggggctcaagctcgggggggctgccacggatgccgagcgcagcgcggcgcctgcc
ggggacgtccccgctgcccgggccggccagggggaggcgcatggcaggcacgcggatggc
cgtgcggcttccgctgccggcaaaccggccagtgccggcccggcggctgcgcccgcaccg
gcagccgtgccggcgggccagcgctacacggcctggaccttcggcgaactgcccgagctg
atggaaatccgcaagggcgggcagacgctcatcggcttcccggcgctcatcgatggcggc
gatgcggtgaccatcgaggtgttcgacgaacccggggtggccgcagcgcgccaccgcgcg
ggcttgcgccggctgttcgcgctgcagatcaaggatgcgctcaagtacctggaaaagaac
atcccggacatgcagaagatggcggtcgcctacatgccgctgggcacgcaggaagagttg
cgcgcgcagatcatcgacgtcgcgctggaccgcgctttcctggtcgaccccctgcccacg
accgaggcagacttccagcgccgcgtgcaggaaggccgggggcggcttacgctgatcgcc
aacgaggtcgcgcggctggccggtgcgatcctgctcgaatacgccgcggcggcgcgcaag
atcaaggatacgaaaggtgcacccgaggccacccaggacgcgcagcagcaactgcaaagg
ctcattccgaagaacttcctggcggtggcgccctggtcgcagcttgcgcacttccctcgc
tacctgaaggccatcaccctgcgcctggacaaggtgcgcgccgatcctgcacgcgacgcc
acgcggctcgcggaactgcgcccccaggagcagcgctactggcggctcgtggccgagcgc
aaggggcaggtggatgcgcgcatgcaggagttccgctggctgctggaggaactgcgggtg
agcttcttcgcccaggaactccgcacgccgcaacccgtgagcgtgaagcgcctggacaag
ctctgggcacagatcaacagctga
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