Acidovorax sacchari: AVXHC19_28430
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Entry
AVXHC19_28430 CDS
T10802
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
asah Acidovorax sacchari
Pathway
asah03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
asah00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AVXHC19_28430 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
asah03400
]
AVXHC19_28430 (ligD)
Enzymes [BR:
asah01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AVXHC19_28430 (ligD)
DNA repair and recombination proteins [BR:
asah03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AVXHC19_28430 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
BFO56040
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All DBs
Position
3209007..3211820
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AA seq
937 aa
AA seq
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MARRSRTSGTAQEAPQKAQKKAPPDALADYARKRDFRNTPEPGAEPGDTLPRGALRFVVQ
KHWASRLHYDFRLEIDGTMKSWAVPKGPSFDPRDKRMAVQVEDHPVAYNRFEGQIPARQY
GAGRVIIWDKGYWVPLEDPARAWSAGKLKFELHGHKLQGRWTLVRMHGRGNERQPPWLLI
KERDGLERDAVEYSVVDALPDSVKSLPDLPEPAPAQGRQAPAPAGSSPARGTAARAKAAA
SPPALEPAAGRAVRAGTPPRPKKAALPAALAPQLATLVDGPPTDLADWTFELKFDGYRIL
ARIEGGEVRLITRNGNDWTHRMPGLARAVRALPVESGWIDGEIVVPDRHGIPDFQALQNA
FESGRRPGRNAAGPADDGAVDRSGLIFYVFDLPFLNGHDLQGLPLAERRQALRTLVAEAG
SDTVRFSDAFKASPGELIASACRLGFEGVIGKRVSSAYVSGRSADWIKLKCGQRQEFVIG
GYTDPQGTRTGLGSLLLGVHGDDGQLHYAGNVGSGFSERTLTTLLGLLRSLAADRSPFAE
GTQVGRKAHWVKPQLLAEVAFAGWTQTRHVRQAVFRGLREDKPAREIVRETTTPAAAVEA
PPSAPPASPRRAPTETTPSRVRSTMTSRRTASAPSPAAPPSSLRVTHGDRVIDAASGTTK
LDLVRYYALVAPLMVEHLRQRPVSVVRAPEGVGGELFFQKHPEHGSVDGVRTLDPALDPG
HPPLAEIAGPEGLPAWAQMNTIEFHSWNARSDRIDRPDRMAFDLDPGEGVPWDKVQEAAT
LMRVMLTELGLPGFLKTSGGKGLHVVVPVKRLHGWDTVKGFSQAVVQHMARTIPQLFVAK
SGPRNRVGKIFVDYLRNGFGATTVSAWSARARPGLGISVPLRWDELGALSSSTEWTVATV
EDRLREGNAPWDGYDKAAVSITQAMKMLGYEAPRGGR
NT seq
2814 nt
NT seq
+upstream
nt +downstream
nt
atggcacgacgctccaggacctccggcactgcgcaggaagcgccgcagaaagcgcagaaa
aaggcgccaccggacgccctcgcagactacgcccgcaagcgggacttccgcaacaccccc
gagcccggcgcggagccgggcgacacgctgccccggggcgcgctgcgcttcgtggtgcag
aagcactgggccagccgcctgcactatgacttccggctggaaatcgacggcaccatgaag
agctgggccgtgcccaaggggccgagcttcgatcccagggacaagcgcatggccgtgcag
gtggaagaccatccggtcgcctacaaccgcttcgagggccagatccccgcgcggcagtac
ggcgcgggccgcgtcatcatctgggacaagggctactgggtgccgctggaggacccggcc
cgcgcgtggagcgccggcaagctcaagttcgaactgcacggccacaagctccagggccgg
tggacgctggtgcgcatgcacggccggggcaacgagcgccagccgccgtggctgctcatc
aaggaacgcgacgggctggaacgcgacgccgtcgagtacagcgtggtggacgcgctgccg
gacagcgtgaagtcgctgcccgacctgcctgaacccgcgcccgcgcagggcaggcaagcc
cctgcccctgccggctcatcccccgcccgcgggacggccgcccgcgccaaggcggcggcc
tccccgccggcactggagccggccgcaggccgggctgtccgggccggcacgcccccgcgc
ccgaagaaggcggccctgcccgcggcgctggcgccgcaactggctacgctggtggacggc
ccgcccaccgacctggcggactggacgttcgagctcaagttcgacggctaccgcatcctc
gcgcggatcgagggcggcgaggtgcgcctcatcacccgcaacggcaacgactggacccac
cgcatgcccggcctggcgcgcgccgtgcgcgccctgccggtggaatccggctggatcgac
ggcgaaatcgtggtgcccgaccggcacggcattcccgacttccaggcgctgcagaacgcc
ttcgagagcgggcgccggcccggacgcaacgcggcgggccccgcggatgacggcgcggtg
gaccgcagtggcctgatcttctatgtcttcgacctgcccttcctcaacggccacgacctg
cagggcctgccgctggcagagcgcaggcaggcgttgcgcacgctcgtggccgaggccggc
agtgatacggtgcgcttcagcgacgcgttcaaggcgtcgcccggcgagctgatcgcttct
gcctgccggctcggcttcgagggcgtgatcggcaagcgcgtgtcgtcggcctacgtgtcc
ggccggtcggccgactggatcaagctcaagtgcgggcagcggcaggagttcgtgatcggc
ggctataccgacccgcagggcacgcgcaccggcctcggctcgctgctgctgggggtgcac
ggggacgacgggcaactgcactatgcgggcaacgtgggctccggcttcagcgaacgcacc
ttgacgacgctgctcgggctgctgcgctcactcgccgcagaccgcagccccttcgccgaa
ggcacgcaggtgggccgcaaggcgcactgggtcaagccgcagctgctcgcggaggtggcc
ttcgcgggctggacgcagacgcgccatgtccgccaggcggtcttccgcggcctgcgcgag
gacaagcccgcgcgcgagatcgtgcgcgaaacaaccacgccggccgccgcggtggaggcc
ccgccctccgccccgcctgcctccccgcgccgtgcccccaccgagaccacgccctccagg
gtccgctccaccatgacctcccgccgaaccgcatccgccccgtcccctgccgccccgccc
tcctcgctgcgcgtgacccacggcgaccgggtgatcgatgccgcgagcgggaccaccaag
ctggacctggtgcgctactacgcgctggtcgcgccgctgatggtggagcatctgcgccag
cgccccgtctcggtcgtgcgggccccggaaggcgtgggcggggaactcttcttccagaag
caccccgagcacggctcggtggacggcgtgcgcacgctggacccggcgctggatcccggc
cacccgcccctggccgaaatcgcggggccggaaggcctgccggcctgggcccagatgaac
accatcgagttccacagctggaacgcccgcagcgaccgcatcgaccggcccgaccggatg
gccttcgacctcgaccccggcgaaggcgtgccctgggacaaggtgcaggaggccgccacg
ctgatgcgcgtgatgctgacggaactgggcctgccgggctttctcaagaccagcggtggc
aaggggctgcatgtggtcgtgcccgtcaagcgcctgcacggctgggacacggtgaagggc
ttttcccaggcggtggtgcagcacatggcgcgcacgatcccgcagctgttcgtggccaag
agcgggccgcgcaaccgcgtgggaaaaatcttcgtggattacctgcgcaacggcttcggc
gccaccaccgtgagtgcctggtcggcgcgggcacggccggggctcggcatttccgtgccc
ctgcgctgggatgaactgggcgcgctctccagcagcaccgaatggacggtggccacggtg
gaagaccggctgcgcgaaggcaacgcgccgtgggacggctacgacaaggcggcggtctcc
atcacgcaggccatgaagatgctcgggtacgaggcgccacgcggggggcggtga
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