Acidovorax sacchari: AVXHC19_33260
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Entry
AVXHC19_33260 CDS
T10802
Symbol
pcnB
Name
(GenBank) polynucleotide adenylyltransferase PcnB
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
asah Acidovorax sacchari
Pathway
asah03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asah00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AVXHC19_33260 (pcnB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asah03019
]
AVXHC19_33260 (pcnB)
Enzymes [BR:
asah01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
AVXHC19_33260 (pcnB)
Messenger RNA biogenesis [BR:
asah03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
AVXHC19_33260 (pcnB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol_arg_C
PolyA_pol
PolyA_pol_RNAbd
Gad2
DUF2204
Motif
Other DBs
NCBI-ProteinID:
BFO56523
LinkDB
All DBs
Position
complement(3778770..3780362)
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AA seq
530 aa
AA seq
DB search
MIKKFIDKLLGKAAPGTGRGKHRFGKREDVPASVHGIDPELVDRRATEVVRTLQQAGYEA
YIVGGAVRDLLLGLKPKDFDVATNATPEQVKGLFRRAFIIGKRFRIVHVVHGRGREHEVI
EVSTFRAYLDNAAAEQVSGNEKTSRAALAGMQHAVDASGRVLRDNVWGPQDEDATRRDFT
INAMYYDPATQVVVDYHKGIQDARKKVIRMIGDPATRYREDPVRIIRAVRFAAKLAGVGF
TIEPKTAAPLVESQALLADVPQSRMFDEMLKLLQTGHAIATIEQLKKLGLATGIYPLLDV
VVERAGTSFVSAALADTDRRVGEGKPVAPSFLLACVLWQDVKTQWDRRLAQREHPFPALQ
GAIDDVFDQRIGDVSGRGKLAADMREIWVMQPRFEKRVGTTPFSMVTHLRFRAGFDFLRL
RADVGEIDEALADWWQEFQLADEARREDMIDQVREEQKQRQRKNQPVVRRVPKPVPQDGA
AAADDAPQAPADADGAEGGAGDSGAVKKRRRRRRKPAGGGDGAPQGAPDA
NT seq
1593 nt
NT seq
+upstream
nt +downstream
nt
atgatcaagaagttcatcgacaagctgctcggcaaggccgctccgggcacgggccgtgga
aaacaccgcttcggcaagcgcgaggacgtgcctgcctccgtgcacggcatcgacccggaa
ctcgtggaccgccgcgccaccgaggtggtgcgcacgctgcagcaggccggctacgaggcc
tacatcgtcggcggcgccgtgcgcgacctgctgctgggcctcaagcccaaggacttcgac
gtggccacgaacgccacgccggaacaggtcaagggcctgttccgccgggccttcatcatc
ggcaagcgcttccgcatcgtgcacgtggtgcacggccgcggccgcgagcacgaggtgatc
gaggtctccaccttccgcgcctacctcgacaatgccgcggccgagcaggtcagcggcaac
gagaagacctccagggccgcgctggcgggcatgcagcacgccgtggacgccagcggccgc
gtgctgcgcgacaacgtctggggcccgcaggacgaggacgccacgcgccgcgatttcacc
atcaacgcgatgtactacgacccggcaacgcaggtggtggtggactaccacaagggcatc
caggacgcgcgcaagaaggtgatccgcatgatcggcgacccggccacgcgctaccgcgag
gatccggtgcgcatcatccgcgcggtgcgcttcgcggccaagctcgcaggtgtcggcttc
acgatcgagcccaagaccgcggcgcccctggtggagtcgcaggcgctactggccgacgtg
ccgcagagccgcatgttcgacgagatgctcaagctgctccagacgggccatgccatcgcc
acgatcgagcagctcaagaagctgggcctcgccaccggcatctacccgctgctggacgtg
gtggtggagcgggccggtacctccttcgtgagcgccgcgctggccgacaccgaccgccgc
gtgggcgagggcaagccggtcgcgccgagcttcctgctcgcctgcgtgctctggcaggac
gtgaagacgcaatgggaccgccgcctcgcgcagcgcgagcatccgttcccggcgctgcag
ggggcgatcgacgacgtgttcgaccagcgcatcggcgatgtgtccggccgcggcaagctg
gccgccgacatgcgcgagatctgggtcatgcagccgcgcttcgaaaagcgcgtgggcacc
acgccgttcagcatggtcacgcacctgcgcttccgggcgggcttcgacttcctgcggctg
cgcgccgatgtgggcgagatcgacgaggccctggccgactggtggcaggagttccagctg
gccgacgaggcccgccgggaggacatgatcgaccaggtgcgcgaggagcagaagcagcgg
cagcgcaagaaccagcccgtggtgcgccgcgtgcccaagccggtcccgcaggacggcgcg
gccgctgccgatgacgcgccgcaggcgcccgccgacgccgatggcgccgaaggcggtgcc
ggcgattccggtgccgtgaagaagcgccgccgccgccgccgcaagcctgcaggcggaggc
gacggcgccccgcagggcgcccccgacgcctga
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