Acidovorax sacchari: AVXHC19_46110
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Entry
AVXHC19_46110 CDS
T10802
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
asah Acidovorax sacchari
Pathway
asah03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
asah00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AVXHC19_46110 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
asah03021
]
AVXHC19_46110 (rpoC)
03400 DNA repair and recombination proteins [BR:
asah03400
]
AVXHC19_46110 (rpoC)
Enzymes [BR:
asah01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AVXHC19_46110 (rpoC)
Transcription machinery [BR:
asah03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AVXHC19_46110 (rpoC)
DNA repair and recombination proteins [BR:
asah03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AVXHC19_46110 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
BFO57808
LinkDB
All DBs
Position
complement(5238013..5242248)
Genome browser
AA seq
1411 aa
AA seq
DB search
MKSLLDLFKQFTPDEHFDAIRIGMASPEKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIDLAAPCAHIWFLKSL
PSRLGLVLDMTLRDIERVLYFEAYVVTDPGMTPLKKFGIMSEDDHDAKRKEYGDEFIAKM
GAEGIKDLLEGIDIDLEIEKLRGDLTGSEVKVKKNAKRLKVLEAFKKSGIKPEWMVLDVL
PVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNSRLRRLLELKAPEIIARNEKRMLQEA
VDSLLDNGRRGKAMTGANKRALKSLADMIKGKSGRFRQNLLGKRVDYSGRSVITVGPTLK
LHQCGLPKLMALELFKPFIFSRLEQMGIATTIKAAKKEVESGTPVVWDILEEVIKEHPVM
LNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSVEAQMEART
LMLASNNVLFPASGEPSIVPSQDVVLGLYHATRDKINGKGEGLVFADTGEVQRALDASQV
ELHARISVRLTEWTKDKATGEFVPSTSLVDTTVGRALLSEILPKGLPFSNINKALKKKEI
SKLINVSFRKCGLKETVVFADKLLQNGFRLATRAGFSVAIDDMLVPPQKTEILARAEAEV
KEIEQQYVSGLVTAGERYNKVVDIWGKAGDDVSKVMMDQLKVEKTTDRHGKEVNQESFNA
IYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARK
GLADTALKTANSGYLTRRLVDVTQDLVVTEEDCGTSNGSVMRAIVEGGEVIESLRERVLG
RSTAEEVLHPETRAVLVPAGQMLDEDTLEELEAAGVDEVKVRTALTCETRYGLCAKCYGR
DLGRGGLINLGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAIASSVEAKSNGVIGFN
ATMRYVTNSKGELVVIARSGEVIIQDEHGRERERHKVPYGATLTVKADQQVKAGTILANW
DPLTRPIITEFAGQVKFENIEEGLTVAKQVDDVTGLSTLVVIDPKRRGSAKVVRPQVKLV
DANGAEVKIPGTDHSVTIGFQVGALIQVRDGQDVGPGEVLARIPVEGQKTRDITGGLPRV
AELFEARSPKDKGMLAEITGTVSFGKETKGKVRLQITDPDGKVWDELVPKEKNVLVHEGQ
VVNKGELIVDGPADPQDILRLLGIEELSRYIVDEVQDVYRLQGVKINDKHIEVIVRQMLR
RVVVENPGESGYIAGEQVERSEILNTNEQLQSEDKIPATYSNVLLGITKASLSTDSFISA
ASFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGLAYHQARKAKEAMDDAERRA
IAEAEAAEMATTAPDEAPEVEGSGVESGAAE
NT seq
4236 nt
NT seq
+upstream
nt +downstream
nt
atgaagtctctactcgacctgttcaagcaattcacgccggacgagcatttcgatgccatc
cgcatcggcatggcgtcgccggagaagatccgttcctggtccttcggcgaggtgaagaag
cccgagacgatcaactaccgcacgttcaagcccgagcgcgacggcctgttctgcgccaag
atcttcggcccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcctgaagcac
cgcggcgtgatctgcgagaagtgcggcgtggaagtgacgcagaccaaggtgcgccgcgag
cgcatgggccacatcgacctggccgcaccctgcgcgcacatctggttcctgaagtcgctg
ccgtcgcgcctgggcctggtgctcgacatgacgctgcgcgacatcgagcgcgtgctgtat
ttcgaagcctacgtggtgaccgaccccggcatgaccccgctgaagaagttcggcatcatg
tccgaggacgaccatgacgcgaagcgcaaggaatacggcgacgagttcatcgccaagatg
ggcgcggaaggcatcaaggacctgctcgaaggcatcgacatcgatctggagatcgagaag
ctgcgtggcgacctgaccggctccgaagtcaaggtcaagaagaacgccaagcgcctgaag
gtgctggaagcgttcaagaagtcgggcatcaagcccgagtggatggtgctggacgtgctg
cccgtgctgccgccggacctgcgtccgctggtgccgctggacggcggccgcttcgcgacc
tccgacctgaacgacctgtaccgccgcgtcatcaaccgcaactcgcgcctgcgccgcctg
ctggagctgaaggctccggagatcatcgcgcgcaacgagaagcggatgctgcaggaagcc
gtcgattcgctgctggacaacggccgccgcggcaaggcgatgacgggcgcgaacaagcgc
gcgctgaagtcgctggccgacatgatcaagggcaagtccggccggttccgccagaacctg
ctgggcaagcgggtggactactccggccgttccgtgatcaccgtgggtccgacgctcaag
ctgcaccagtgcggcctgccgaagctgatggccctggagctgttcaagcccttcatcttc
tcgcgcctcgagcagatgggcatcgccacgaccatcaaggccgcgaagaaggaagtcgaa
tccggcacgccggtggtctgggacatcctggaagaggtcatcaaggagcacccggtcatg
ctgaaccgtgctccgacgctgcaccgcctgggcatccaggccttcgagccgatcctgatc
gaaggcaaggccatccagctgcacccgctcgtctgcgcggccttcaacgccgacttcgac
ggtgaccagatggccgtccacgtgccgctgtcggtggaagcgcagatggaagcccgcacg
ctgatgctggcctccaacaacgtgctgttccccgcttccggcgagccctccatcgtgcct
tcgcaggacgtggtgctgggtctctaccacgcgacccgcgacaagatcaacggcaagggc
gaaggcctggtgttcgccgacacgggcgaagtccagcgtgcgctggacgccagccaggtc
gagctgcatgccaggatcagcgtgcgcctgaccgagtggaccaaggacaaggcgacgggt
gagttcgtgccctcgacctcgctggtcgacacgaccgtgggccgcgcgctgctgtcggag
atcctgcccaagggcctgcccttcagcaacatcaacaaggcgctgaagaagaaggaaatc
tccaagctcatcaacgtgagcttccgcaagtgcggcctgaaggaaaccgtggtgttcgcg
gacaagctgctgcagaacggcttccgcctggccacgcgcgccggcttctccgtggcgatc
gacgacatgctcgtgccgccgcagaagacggagatcctcgcccgcgccgaagccgaggtg
aaggagatcgagcagcagtacgtctccggtctcgtgaccgccggcgagcgctacaacaag
gtggtggacatctggggcaaggccggcgacgacgtgtccaaggtgatgatggaccagctc
aaggtcgagaagaccaccgaccgccacggcaaggaagtgaaccaggagtccttcaacgcc
atctacatgatggccgactcgggcgcccgcggttccgccgcgcagatccgccagctggcc
ggcatgcgcggcctgatggccaagccggacggctccatcatcgagacccccatcacggcg
aacttccgtgaaggcctgaacgtgctgcagtacttcatctccacccacggtgcccggaag
ggcctggcggatacggcgctgaagaccgcgaactccggctacctcacccgccgcctggtg
gacgtgacgcaggatctcgtggtgaccgaagaggactgcggcacgagcaacggctcggtg
atgcgcgccatcgtcgaaggcggtgaagtgatcgagtcgctgcgcgagcgcgtgctcggc
cgctccacggccgaagaggtgctgcaccccgaaacccgcgccgtgctggtgccggccggc
cagatgctggacgaggacaccctcgaggagctggaagccgccggcgtggacgaagtgaag
gtgcgcaccgcgctgacctgcgagacgcgctacggcctctgcgccaagtgctatggccgc
gacctgggccgtggcggcctgatcaacctcggcgaagccgtgggcgtgatcgctgcccag
tccatcggcgaacccggcacgcagctgacgatgcgtacgttccacatcggtggtgccgct
tcgcgtgccgccatcgcatcgagcgtggaagccaagtccaacggcgtgatcggcttcaat
gccacgatgcgctacgtgaccaacagcaagggcgagctggtggtgatcgcgcgttcgggc
gaggtcatcatccaggacgagcacggccgcgagcgcgagcgccacaaggtgccgtacggc
gcgacgctgacggtgaaggccgaccagcaggtcaaggccggcacgatcctggccaactgg
gatccgctgacgcgaccgatcatcacggaattcgccggccaggtgaagttcgagaacatc
gaggaaggcctcaccgtcgccaagcaggtggacgatgtgaccggcctgtccacgctggtc
gtgatcgatccgaagcgccgcggctccgccaaggtggtgcgcccgcaggtgaagctggtc
gatgcgaacggcgccgaggtgaaaatccccggcaccgaccactcggtgacgatcggcttc
caggtgggcgcgctgatccaggtgcgcgacggccaggacgtgggccccggcgaggtgctg
gcgcgtattccggtcgaaggccagaagacccgcgacattaccgggggtctgccgcgcgtg
gccgagctgttcgaagcccgttcgcccaaggacaagggcatgctggccgagatcaccggc
acggtgtccttcggcaaggaaaccaagggcaaggtgcgcctgcagatcaccgatccggac
ggcaaggtctgggacgagctggtgcccaaggaaaagaacgtgctggtccacgaaggccag
gtggtgaacaagggcgagctgatcgtcgatggcccggccgatccgcaggacatcctgcgc
ctgctgggcatcgaggagctgtcgcgctacatcgtcgatgaagtgcaggacgtctatcgc
ctgcagggtgtgaagatcaacgacaagcacatcgaggtgatcgttcgccagatgctgcgc
cgcgtcgtggtcgaaaacccgggcgagtccggctacatcgccggcgagcaggtcgagcgt
tcggagatcctcaacaccaacgaacagctgcagtccgaggacaagatccccgcgacctac
agcaacgtgctgctgggtatcacgaaggcttcgctgtccaccgattcgttcatctcggcc
gcttccttccaggaaacgacccgcgtgctcaccgaggctgccatcatgggcaagcgcgac
gagctgcgcggcctgaaggagaacgtgatcgtgggccgtctgatcccggcgggtaccggc
ctggcctaccaccaggcacgcaaggccaaggaagccatggacgacgccgagcgccgcgcc
atcgccgaggccgaggccgccgagatggccaccacggcccctgacgaagctccggaagtc
gaaggctccggcgtggaaagcggcgcggccgagtaa
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