Agrobacterium salinitolerans: CFBP5507_04835
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Entry
CFBP5507_04835 CDS
T08921
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
asal
Agrobacterium salinitolerans
Pathway
asal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CFBP5507_04835
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asal03019
]
CFBP5507_04835
Messenger RNA biogenesis [BR:
asal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CFBP5507_04835
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B_2
RNase_J_C
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Regulator_TrmB
Motif
Other DBs
NCBI-ProteinID:
UYZ08334
UniProt:
A0A4Z1R9H3
LinkDB
All DBs
Position
Circular:976397..978064
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AA seq
555 aa
AA seq
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MAKQDELVFVPLGGVGEIGMNLALYGYGPASKREWIMVDCGVTFAGLDLPGVDLVLPDIS
YIAEQKKNLKGIIITHAHEDHYGALNDLWPGLNVPVYASPFTAGMLEAKRAYEGTRAEIP
VTIFKAGDRINVGPFEIEAVGVNHSIPEPMSLVIRTPLGNVIHTGDWKIDEAPSLGPLTD
ETRFRAIGEEGVLALMCDSTNSLRDGVSPSEHEVSEGLRQIIENAEGRVAVTTFSSNVGR
IRSIAQAAEAAGREVLLLGSSLKRVVNVSQDLGIMEGIKPFLAEDEFGYIPRDRVVLILT
GSQGEPRAALAKLSRDEMRNVALASGDTVVFSSRAIPGNEKAIIEIKNGLIEQGVHIVTD
NEALVHVSGHPRRNELLRMYEWTKPQIVVPVHGEAAHLVAQKELAEQAGISQVPKVRNGN
VLRLAPGPAEVIDDVPHGRVFKDGNLVGDMDEMGISNRRKLSFAGHVAVNVVLDSRYDFL
GDPDVVPFGLPEFDDEDEAMEDTLYDAVLGAVESIPRARRKDLALLRESVRRAVRAAANQ
SWGKKPIVTVFVTKV
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atggctaaacaggacgaactggtctttgtgccgctcggcggcgtgggtgaaatcgggatg
aatctggcgctttacggctacgggccggcaagcaagcgcgaatggatcatggtggattgc
ggcgtgacctttgccggtctcgatcttcctggtgtcgatctcgtgctgcccgatatcagt
tacatcgccgagcagaaaaagaacctcaagggcatcatcatcacccacgcccatgaggat
cattatggcgcgctgaacgatctgtggcccggcctcaatgtgccggtctatgcctcgcca
ttcacggccggcatgctggaggcgaagcgcgcctatgagggcacgcgcgctgaaattccg
gtgacgatcttcaaggctggtgaccggatcaacgttggcccctttgaaatcgaagccgtt
ggcgtcaaccattctataccggagccgatgtcgctggtcatccgcacaccgctcggcaat
gtcatccacaccggtgactggaagatcgacgaagcgccgtcgcttgggccgttgacggat
gaaacccgcttccgcgccatcggtgaagagggcgtgctggcactgatgtgcgacagcacc
aattcactgcgcgatggcgtgtcgccctccgaacacgaggtgtccgaaggcctgcgtcag
atcatcgaaaatgctgaaggccgcgttgccgttaccaccttctcctcgaatgtcgggcgc
atccgctcgattgcgcaggctgcggaagctgccggccgcgaggtgctgctgctcggctcg
tcgctgaagcgcgtcgtcaacgtctcgcaggatctcggcatcatggaaggcatcaagccg
ttcctcgctgaagatgaattcggctatattccgcgtgatcgtgtggtgctgatcctgacc
ggttcgcagggcgaaccgcgtgcagcgctcgccaagctttcccgcgacgagatgcgcaat
gtggcgctcgcgtcgggagatactgtcgtcttttcctcacgcgccattcccggcaacgaa
aaggcgatcatcgagatcaagaacggcctgatcgaacagggcgtgcacattgtcacggac
aatgaggcgctggtgcatgtgtccggccatccgcgccgcaacgagcttctgaggatgtat
gaatggacgaagccgcagatcgtcgtgcccgtccatggcgaggcggcacatctggtggcg
cagaaggaactggccgaacaagccggtatttcgcaggtgccgaaggtgcgcaacggcaac
gttctgcgccttgcgccgggtcctgcggaagtcatcgatgacgtgccgcacggccgcgtc
ttcaaggacggcaatctcgtcggtgacatggacgaaatgggcatcagcaaccgccgcaag
ctgtcctttgccggccatgtcgccgtcaacgtcgtgctggatagtcgttacgacttcctc
ggcgatcccgacgtcgtgcctttcggcctgccggaattcgacgacgaggatgaggcgatg
gaagacacgctttatgatgctgtactcggcgccgtcgagagcattccgcgcgcccgtcgc
aaggacctcgcactgctgcgcgaatcggtgcgccgcgccgtgcgcgccgccgccaaccag
agctggggcaagaagccgatcgtgacggtttttgtgaccaaggtctga
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