Agrobacterium salinitolerans: CFBP5507_04860
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Entry
CFBP5507_04860 CDS
T08921
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
asal
Agrobacterium salinitolerans
Pathway
asal03030
DNA replication
asal03430
Mismatch repair
asal03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
asal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CFBP5507_04860 (dnaE)
03430 Mismatch repair
CFBP5507_04860 (dnaE)
03440 Homologous recombination
CFBP5507_04860 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
asal03032
]
CFBP5507_04860 (dnaE)
03400 DNA repair and recombination proteins [BR:
asal03400
]
CFBP5507_04860 (dnaE)
Enzymes [BR:
asal01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CFBP5507_04860 (dnaE)
DNA replication proteins [BR:
asal03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CFBP5507_04860 (dnaE)
DNA repair and recombination proteins [BR:
asal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CFBP5507_04860 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
Motif
Other DBs
NCBI-ProteinID:
UYZ08339
UniProt:
A0A4Z1QVY1
LinkDB
All DBs
Position
Circular:983014..986514
Genome browser
AA seq
1166 aa
AA seq
DB search
MGDAVMRGEISGETLKTPGFVHLRVHSAYSLLEGALPLKKIMSKAVADGQPAIAITDTNN
LFVALEFSEKARDEGLQPIIGCQLSIDMQDAAEDRRNHNSHLQKLPAIVLLAANAEGYER
LVDLVSRAYLDGEGGSHSVHITRAWLEEASNAGLIALTGATGGPVDMALKEGHAAQAKER
LLTLKSLFGDRLYIELQRQSGYDRSHERRLIGLAYEHDIPLVATNEAFFPSKADYEAHDA
LMAVAHNAIVSDDSRFRLTPDHYLKSRDEMTALFADLPEALENTVEIALRCSYVLKKRGP
ILPRFTGASDDPEAAELAETEELRRQAVEGLDQRLAALGMAPGYTEQDYRERLDFELGVI
SRMKFPGYFLIVADFIKWAKQHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFL
NPERVSMPDFDIDFCQDRREEVIRYVQAKYGREQVAQIITFGSLQARAALRDVGRVLEMP
YGQVDKICKLVPNNPANPTPLSKAIEEEPRLQEEADKEPVVARLLDIAQKIEGLYRHAST
HAAGIVIGDRPLSKLVPMYRDPRSDMPVTQFNMKWVESAGLVKFDFLGLKTLTVLKVAVD
FVAKRGIAVDLAAIPLDDAKTYEMLSRGETIGVFQVESAGMRKALIGMRPDCIEDIIALV
ALYRPGPMENIPVYNARKHGEEELESIHPTIDHLLKETQGVIVYQEQVMQIAQVLSGYSL
GEADLLRRAMGKKIKEEMDKQRERFVDGAIKNGVSKPQANTIFDLLAKFANYGFNKSHAA
AYAIVSYQTAYMKAHYPVEFLAASMTLDMANTEKLNDFRQDAGRLGIEVVAPSVQTSFRQ
FETGENRIYYSLAAIKGVGEGAVEHIVQVRDGKPFTSLEDFCLRIDPKQINRRVLESLIN
AGAFDCFGRDRAELIGGLDRIIGYAQMAQNNRTIGQSDMFGSGSGSGPEKLVLPAFQPWL
ASEKLLREYQVLGFYLTAHPLDTYRPVLEKLRVQNFADFSAAVKQGATAGRLAGTVTGKQ
ERKTRAGNKMGIVTFSDASGQYEAVLFSEGLGQFRDLLEVGKSLVITVQAEERPEGIGLR
IQTAQSLEEKSVQMQKALRVYVRDSGPLKTVARHLNTKGDGSVYFIVIKDEGSREIEVEL
TEKYRISPEIAAALRSAPGVVDVELV
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atgggcgatgcggttatgcgtggagagatctctggcgaaacgttgaagacgcccggtttt
gtccatcttcgggttcattccgcttattccctgcttgagggggccttgcccctcaagaaa
atcatgtccaaggccgtcgcggacggtcaaccggccattgccattaccgataccaacaat
cttttcgtcgcgctggaattttccgaaaaggcgcgggacgagggtctgcagccgatcatc
ggctgccagctgtccatcgacatgcaggatgcggcggaggatcgccgcaaccacaacagc
catcttcagaaacttcccgccatcgttctccttgccgccaatgcggaaggctatgagcgg
ctggtggatctcgtcagccgcgcctatctggacggtgagggcggcagccattccgtgcac
attacccgcgcatggctggaggaggcctccaatgccggcctcatagcgctcaccggcgca
accggtggccctgtcgatatggcgttgaaggaaggccacgccgcgcaggcgaaagagcgg
ctgctgacgctgaagtcactctttggtgataggctttatatcgaattgcagcgccagtcc
ggttacgaccgctcccatgagcggcgcctgattggtctggcttacgaacacgatattcca
ctcgttgccaccaacgaggcgttcttcccctccaaggccgactacgaggcgcatgacgcg
ttgatggcagtggcgcataacgccatcgtgtccgatgacagccggttccgcctgacaccc
gatcactacctcaaaagccgtgacgagatgacggcgctgtttgccgatcttcccgaggcg
ctggagaacaccgtcgagatcgcgctccgatgctcctatgtgctgaaaaagcgcgggccg
atcctgccgcgtttcaccggcgccagcgacgatccggaagcagccgagctggccgaaacc
gaggaactgcgccgacaggcggtggaggggctggatcagcggcttgccgcgcttggcatg
gcgcccggttatacggaacaggattatcgcgaaaggctggatttcgaactcggcgtcatc
tcgcgcatgaagttccccggttacttcctgatcgttgccgacttcatcaaatgggcaaag
cagcatgatattccggtcggcccgggccgcggttcgggtgcgggctcgctcgtcgcttat
gcgctgaccattaccgatgtcgatccgctgcgcttctcgttgctgttcgaacgctttctc
aatcccgaacgcgtttcgatgcccgacttcgatatcgacttctgccaggaccgccgtgaa
gaggtgatccgttacgtgcaggccaaatatggccgggagcaggtggcgcagatcatcacc
ttcggttcgctacaggcgcgcgcggccctgcgcgacgttggccgcgtgctggagatgccc
tatgggcaggtggacaagatttgcaagctggtgcccaacaacccggccaatccgacaccc
ctgtcgaaagcgatcgaggaagagccgcgcctgcaggaggaggcggacaaggagccggtc
gtcgcccgcctcctggatatcgcccagaagatcgaaggactttaccgccatgcctccacc
catgccgccggtattgtcatcggtgaccgaccgctgtcgaagctggtgccgatgtatcgc
gatccgcgatccgatatgccggttacgcagttcaacatgaaatgggtggaaagcgcgggc
ctcgtcaaattcgactttctcggcttgaagacgctgacggtgctgaaggtcgccgtcgat
tttgtcgccaagcgcggcatcgcggtcgatctcgcggccattccgctggacgacgccaaa
acctacgagatgttgtcgcgcggcgaaaccatcggcgtgttccaggtggaaagtgcgggc
atgcgcaaagcgctgatcggcatgcgaccggactgcatcgaggacatcatcgcgctggtg
gcgctttatcgccccggaccgatggaaaacatcccggtctacaacgcccgcaaacatggc
gaggaggagctggaatcgatccacccgaccatcgaccatctgctcaaggaaacgcagggc
gttattgtctatcaggaacaggtgatgcagatcgcccaggtcctctccggttattcgctc
ggcgaagccgatcttctgcgccgcgccatgggcaagaagatcaaggaggagatggacaag
cagcgcgagcgtttcgtcgacggagccatcaagaacggcgtctcgaagccgcaggccaac
accatcttcgacctgctggcgaaattcgccaattacggctttaacaagagccacgccgcg
gcctacgcgatcgtgtcctaccagaccgcctatatgaaggcgcattatccggtggagttc
ctggcggcctccatgacgctcgatatggcgaacacggaaaagctcaacgatttccgtcag
gatgcgggccgccttggcatcgaggtcgtcgcgccttcggtgcagacgtcgttccggcaa
ttcgaaacgggtgagaaccgcatctattattcgctcgccgccatcaagggcgtgggcgag
ggggcggtggagcacatcgtccaggtacgcgacggcaagccgttcacgagccttgaggat
ttctgcctgcgcatcgatcccaagcagatcaaccggcgtgtgctggaaagcctgattaat
gcgggcgccttcgactgtttcggccgcgaccgcgcggaactgatcggcgggctggaccgc
attatcggttatgcgcagatggcacagaataaccgcaccattggacaatcggacatgttc
ggctccggtagcggaagcgggccggaaaaactggttcttccggccttccagccctggctt
gcctccgaaaagctgctgcgcgagtatcaggtgctcggtttttacctcaccgcccatccg
ctcgatacctatcgccccgtgctggaaaagctgcgggtgcagaatttcgccgatttttcc
gccgcggtgaaacagggcgcgactgccgggcgtctggccggcaccgtgaccggcaagcag
gagcgcaaaacccgcgccggcaacaagatgggcatcgtcaccttctcggacgcgtcgggc
caatatgaggcggtgctgttttccgaaggactcggccagttccgcgatctgctcgaagtc
ggcaaatcgctggtcatcaccgtgcaggcggaagaacgccccgaaggtatcggcctgcgt
atccagacggcgcagtcgctggaagaaaaatccgtgcagatgcagaaggcgttgcgtgtt
tatgtgcgcgattccggcccgctgaagaccgttgcccgccacctcaacacaaagggtgat
ggctcggtctatttcatcgtcatcaaggatgagggcagccgtgagatcgaggtggagctg
acggagaaataccgcatttccccggaaatcgccgctgcgctgcggtccgcgcccggtgtc
gtagatgtggaactggtgtga
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