Agrobacterium salinitolerans: CFBP5507_07510
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Entry
CFBP5507_07510 CDS
T08921
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
asal
Agrobacterium salinitolerans
Pathway
asal03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
asal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CFBP5507_07510 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
asal03400
]
CFBP5507_07510 (mfd)
Enzymes [BR:
asal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CFBP5507_07510 (mfd)
DNA repair and recombination proteins [BR:
asal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CFBP5507_07510 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
AAA_22
RecG_dom3_C
UB2H
Glyco_tran_WecG
AAA_16
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
UYZ06116
UniProt:
A0A4Z1QX27
LinkDB
All DBs
Position
Circular:complement(1502092..1505589)
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AA seq
1165 aa
AA seq
DB search
MIAGFDAKLVSSADTPLTIGNVPSGMEALLLADMARAGTSVAYVMSDGQRVADLEQILGF
VAPDIPVMTLPAWDCLPYDRVSPSADTSARRLAALSGLISHAKKPHPAIVLVTVNAMLQK
MAPRDIIESLGFSARPGNQIRMEEIAARLERNGFDRVATVREVGEFAVRGGILDVFVPGT
EEPVRLDFFGDTLESIRTFDPASQRTIGQARSLDLNPMSEVTLTPDTISRFRKNYLSLFG
AATRDDALYQAVSEGRRYAGMEHWLPLFYEQLETAFDYLKDFRIVTDHTAREAAKERSKL
VLDYYDARRSSGETKGSTQGAPYKPVSPGQLYLDGKSFDAALAAVNAVRLTPFNEQDSEG
RPVATLDAHVGPRWARPPTEGESEERVNVFDLAVKHIAERRAKGWKVLITGWSEGSLDRL
LQVLNEHGLEKIKPVTSLKEVEKLGKGEAASAVLSLEAGFETGNLAVIGEQDILGDRMVR
RSKRRKRGADFISEVAGLDEGSLVVHAEHGIGRFVGLRTIEAAGAPRACLELHYADDAKL
FLPVENIDLLSRYGSDAAEAQLDKLGGGAWQMRKAKLKKRLLDMADELIRIAAARLVRHA
PVLTAPDGLYDEFAARFPYDETEDQLNAIEAIREDLGAGRPMDRLICGDVGFGKTEVALR
AAFLAAMNGVQVAVVVPTTLLSRQHFRTFSERFRGLPIRVQQASRLVGSKELTLTKKEVA
DGKTDIVVGTHALLGAGISFANLGLLIIDEEQHFGVKHKERLKELKSDVHVLTLSATPIP
RTLQLAMTGVRELSLITTPPVDRMAVRTFISPFDPLVIRETLMREHYRGGQSFYVCPRLA
DLADIHAFLQSDVPELKVAVAHGQMPAGELEDIMNAFYDGKYDVLLSTTIVESGLDVPTA
NTLIVHRADMFGLAQLYQLRGRVGRSKVRAFALFTLPVNKVLTTMAERRLKVLQSLDTLG
AGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAEVKGDEQVQDSGWSPQ
ISVGTSVMIPEDYVPDLHLRMGLYRRLGELADISEIDGFGAEMIDRFGPLPKEVQHLLKI
VYIKSLCRIANVEKLDAGPKGVVVQFRNKEFPNPGALVGYIGKQGSMAKIRPDHSLFLNR
DLPTPEKRLTGAAMIMTQLAELARS
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atgatagccggattcgatgcaaagctggtgtcgtcggccgatacgccgctgaccatcgga
aacgtaccatcaggcatggaagcccttttgcttgctgacatggcacgggcgggcacgtcg
gtcgcctatgtgatgtcggacggccagcgggtcgccgatctcgaacagatcctcggtttc
gtcgcaccggatattcctgttatgacgctgccggcatgggactgcctgccctatgaccgc
gtgtcaccgagcgccgacacctctgcgcgccggctggcggcgctctccggtctgatctct
cacgccaagaaaccgcatccggccatcgtgctggtcaccgtcaacgccatgctgcagaag
atggcgccgcgcgacattatcgaaagcctgggcttttcggcgcgccccggcaaccagatt
cgcatggaggagattgccgcgcggctggagcgcaacggtttcgaccgggtggcaacggtg
cgtgaggtgggcgagtttgccgtgcgcggcggcattctcgatgtcttcgtgccgggcacg
gaagaaccggtgcggctcgatttcttcggcgatacgctggaaagcatccgcaccttcgat
ccggccagccagcgtaccatcggccaggcgcgctcgctcgatctgaacccgatgagcgaa
gtgacgctgacgccggatacgatcagccggttccgcaagaattacctgtcgctgttcggc
gcggcgacgcgtgacgatgctctttatcaggctgtctccgaaggccgccgttatgccggc
atggagcattggctgccgctgttttatgagcagctggagaccgctttcgattatctgaag
gatttccgcatcgtcaccgatcatacggcgcgggaggcggcgaaagaacgctccaagctg
gtgctcgattattacgatgcgcgccgcagttccggcgaaacaaagggctcgacgcagggt
gcgccctacaagccggtttcgcccggccagctttatctcgacggcaagagcttcgatgcc
gcgcttgctgccgtcaatgcggtgcgcctgacgcccttcaacgagcaggacagcgaaggc
cgtccggtcgcgacgctcgatgcccatgtcggtccgcgctgggcgcggccgccaaccgaa
ggcgagagcgaagaacgggtcaatgttttcgatctggccgtgaagcacattgccgaacgc
cgcgccaagggatggaaggtgcttataacaggctggtcggaaggttcactcgaccggctg
ctgcaggtgctgaacgagcatgggcttgagaaaatcaagccggtcacctcgctgaaagag
gtggagaagctcggaaaaggcgaggcggcctcggcggtgctgagcctcgaagcgggtttc
gagactggaaaccttgccgtcatcggggagcaggatattctcggcgaccgtatggtgcgt
cgctcgaagcgtcgcaagcgcggtgccgatttcatctcggaagtggccgggctggacgag
ggctcgctggtcgtccatgccgaacatggtataggccgtttcgtcggcctgcggaccatc
gaggcggcgggtgcgccgcgtgcgtgtctggaactgcattatgccgatgacgccaagctg
ttcctgccggttgaaaacatcgatcttctgtcccgttacggttccgatgcggcggaagcg
cagctcgacaagcttggcggtggcgcatggcagatgcgcaaggccaagctcaagaagcgc
ctgctcgacatggccgatgagcttatccgcattgcggccgcgcgtctggtgcgccatgcg
ccggtgctgacagcgccggatgggctttatgacgaattcgccgcccgtttcccctatgac
gagacggaagaccagctgaacgccatcgaagccatccgcgaggatctcggtgccggccgg
ccgatggaccggctcatctgcggcgatgtcggtttcggcaagacagaagtggccctgcgc
gccgctttccttgccgccatgaatggcgtgcaggtggcggtggtggtgccgacgacgctg
ctgtcgcgccagcatttccgcactttctcggaacgtttccgcgggttgcccatccgggtg
cagcaggcatcgcgccttgtcggctccaaggaactgacgctgacgaaaaaggaagtggct
gatggcaagaccgatatcgtcgtcggcacccatgcgctgctgggtgcgggcatcagtttt
gccaatctcggcctgctcatcatcgatgaagagcagcatttcggcgtgaagcacaaggag
cgcctgaaggagctgaagagcgatgtgcatgtgctgacgctttctgcaacgcccattccg
cgcaccttgcagcttgccatgacaggcgtgcgcgaactatcgctcatcaccacaccgccg
gtggaccgcatggcggtgcgcaccttcatctcgccgtttgatccgctggtgatccgcgag
acgctgatgcgcgagcattatcgaggcggccagagcttttacgtctgcccccgtcttgcc
gatcttgccgacattcacgcgttcctgcaatcggatgtgccggagctgaaggtagcggtg
gcgcacggccagatgccggcgggcgaactggaagacatcatgaatgccttctacgacggc
aaatatgacgtgctgctgtcgaccaccatcgtcgaatccggcctcgacgtgccgactgcc
aacacgctgatcgtgcatcgcgccgatatgttcggcctcgcccaactgtaccagctacgc
ggccgcgtcggccggtccaaggtgcgcgccttcgcgctcttcaccctgccggtcaacaag
gtgctgacgacgatggccgagcggcggctgaaggtgctgcagtcgctcgatacgctgggc
gccggcttccagctggcgagccacgacctcgatattcgcggtgcgggcaatctgctcggc
gaggaacaatccggccatatcaaggaagtcggtttcgagctttaccagcagatgctggaa
gaggcggttgccgaagtgaagggcgatgagcaggtgcaggatagcggctggtcgccgcaa
atctcggtcggcacctcggtcatgattccggaagattatgttcccgatctgcatctgcgc
atggggctttaccgccgccttggcgagcttgccgacatcagcgagatcgacggtttcggc
gcggaaatgatcgaccgtttcggcccgctgccgaaagaggtgcagcatctgctcaagatc
gtctacatcaagtctctctgccgcattgccaatgtcgagaagctggatgccgggccgaag
ggcgttgtcgtgcagttccgcaacaaggaattcccgaatccgggcgcgctggtcggttac
atcggcaaacagggatcgatggcgaaaatccgccccgatcacagcctgtttctgaaccgc
gatctgccgacgccggaaaagcggctgacgggtgcggcaatgatcatgacgcagcttgcg
gaactggctcggtcgtag
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