Agrobacterium salinitolerans: CFBP5507_08675
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Entry
CFBP5507_08675 CDS
T08921
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
asal
Agrobacterium salinitolerans
Pathway
asal03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
asal00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CFBP5507_08675 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
asal03021
]
CFBP5507_08675 (rpoB)
03400 DNA repair and recombination proteins [BR:
asal03400
]
CFBP5507_08675 (rpoB)
Enzymes [BR:
asal01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CFBP5507_08675 (rpoB)
Transcription machinery [BR:
asal03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CFBP5507_08675 (rpoB)
DNA repair and recombination proteins [BR:
asal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CFBP5507_08675 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
DOCK-C2
Motif
Other DBs
NCBI-ProteinID:
UYZ06332
UniProt:
T2KS27
LinkDB
All DBs
Position
Circular:complement(1719813..1723949)
Genome browser
AA seq
1378 aa
AA seq
DB search
MAQTLSFNGRRRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMVDEPKGGRPDEGLNAVFK
SVFPITDFSGASMLEFVSYEFEAPKFDVEECRQRDLTYAAPLKVTLRLIVFDIDEDTGAK
SIKDIKEQSVYMGDMPLMTNNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKSHSSGKLLF
AARVIPYRGSWLDIEFDAKDIVYARIDRRRKIPVTSLLMALGMDGEDILSTFYTKASYER
DGDGWRIPFQPETLKNAKVITDMIDADTGEVVVEGGKKLTPRLIRQLTEKGLKALKATDE
DLYGNYLAEDIVNYETGEIYLEAGDEIDEKTLGLILQSGFDEIPVLNIDHVNVGAYIRNT
LSADKNENRQEALFDIYRVMRPGEPPTMESAEAMFNSLFFDAERYDLSAVGRVKMNMRLD
LDAEDTVRTLRKEDILAVVKMLVELRDGKGEIDDIDNLGNRRVRSVGELMENQYRLGLLR
MERAIKERMSSIEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQVNPLSEITHKRRL
SALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIESP
YRKIVEGKVTNDVIYLSAMEEAKYYVAQANAPLNEDGSFSEEFVVCRHSGEVMLAPRDNI
NLMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLLRAEAPFVGTGMEPIVAR
DSGAAIASRRGGVVDQVDATRIVIRATEDLDAGKSGVDIYRLQKFQRSNQNTCVNQRPLV
SVGDIISKGDIIADGPSTDLGDLALGRNALVAFMPWNGYNYEDSILMSERIVSDDVFTSI
HIEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVQPGDILVGKITPKG
ESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGTFGTVVEVRVFNRHGVEKDERAMAIERE
EIERLAKDRDDEQAILDRNVYGRLIDMLRGQVSIAGPKGFKKGVELSNAVVSEYPRSQWW
MFAVEDEKAQSELEALRGQYDESKSRLEQRFMDKVEKVQRGDEMPPGVMKMVKVFVAVKR
KIQPGDKMAGRHGNKGVVSRIVPVEDMPFLEDGTHVDICLNPLGVPSRMNVGQILETHLA
WACAGMGKKIGEMLEEYRKTMDISELRSELTEIYASEANDEVQSFDDDSLVKLAEEAKRG
VSIATPVFDGAHEPDVAAMLKKAGLHESGQSVLYDGRTGEPFDRKVTVGYMYMIKLNHLV
DDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVA
GRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLSVELENSKIENQPEDQLPDAAE
NT seq
4137 nt
NT seq
+upstream
nt +downstream
nt
atggctcagaccctttcgtttaacggtcgcaggcgcgtacgcaagtttttcggcaaaatt
ccagaagtagcggaaatgccgaacctcatcgaggttcagaaggcttcgtatgaccagttt
ctcatggttgacgagcccaagggtggccgtcccgacgagggattgaatgccgtattcaaa
tccgtattcccgatcaccgatttctcgggcgcgtccatgcttgaattcgtgtcctacgaa
ttcgaagcgccgaagttcgacgtcgaggaatgccgtcagcgcgatctgacctatgcagcg
ccgctcaaggtgactctgcgtctcatcgtgttcgatatcgatgaagatacgggcgcgaag
tccatcaaggacatcaaggaacagtccgtctacatgggcgatatgccgctcatgaccaat
aacggtacgttcatcgtcaacggcaccgagcgcgtcatcgtttcgcagatgcaccgttcg
ccgggcgtgttcttcgatcacgacaagggcaagagccattcttccggcaagctgctcttt
gctgcccgcgtcatcccgtatcgcggttcctggctcgacatcgagttcgacgccaaggac
atcgtctatgcgcgtatcgaccgccgccgcaagatccccgtgacctcgctgctgatggcg
cttggcatggacggcgaagacattctgtcgaccttctacaccaaggcttcctatgagcgc
gacggcgacggctggcgcattcccttccagcccgagacgctgaagaacgccaaggtcatc
accgacatgatcgacgccgataccggcgaagtcgtggtcgaaggcggcaagaagctgacc
ccgcgcctgatccgccagctgacggagaagggcctgaaggcgctgaaggcgaccgacgaa
gacctttacggcaactatctggccgaagacatcgtcaactacgagacgggtgaaatctat
ctcgaagccggcgacgaaatcgacgagaagaccctcggtctcatcctgcagtcgggcttc
gacgagattccggtcctcaacatcgaccacgtcaatgttggtgcctatatccgcaacacg
ctgtctgcggacaagaacgagaaccgtcaggaagccctgttcgacatctaccgcgtcatg
cgtccgggtgagccgccgaccatggaatcggcggaagcgatgttcaactcgctgttcttc
gatgcagagcgttacgatctgtcggccgtcggccgcgtcaagatgaacatgcgcctcgac
ctagatgcggaagacaccgtgcgcacgctgcgcaaggaagacatcctcgcggttgtcaag
atgctggtcgaactgcgcgacggcaagggcgaaatcgacgacatcgacaacctcggcaac
cgccgtgttcgctctgtcggcgaactgatggaaaaccagtatcgtctgggccttctgcgc
atggaacgtgcgatcaaggaacgtatgtcctcgatcgaaatcgacaccgtgatgccgcag
gacctgatcaacgcgaagccggctgccgccgctgttcgcgaattcttcggttcctcgcag
ctttcacagttcatggaccaggtgaacccgctttcggaaatcacccacaagcgccgtctt
tcggctcttggaccgggtggtctgacccgcgagcgcgcaggcttcgaagtccgcgacgtt
cacccgacccattacggccgtatttgcccgatcgaaacgccggaaggcccgaacatcggt
ctgatcaactcgcttgcaaccttcgcccgcgtcaacaagtacggcttcatcgaaagcccg
taccgcaagatcgtcgaaggtaaggtgaccaatgacgtgatctacctctccgcgatggaa
gaggccaagtattacgtcgcgcaggccaacgcgccgctcaatgaagacggttcgttctcg
gaagagttcgtcgtctgccgtcactcgggcgaagttatgctcgcaccacgtgacaacatc
aacctgatggacgtttcgccgaagcagctcgtttcggtcgcagcggcgctcattccgttc
ctggaaaacgacgacgccaaccgcgctctcatgggctcgaacatgcagcgtcaggctgtt
ccgcttctgcgcgccgaggcgccgttcgtcggtaccggcatggagccgatcgtcgcccgt
gactccggcgctgccattgcgtcccgtcgcggcggtgtcgtcgatcaggtggatgcgacc
cgtatcgttatccgcgccacggaagacctcgatgccggcaagtccggtgttgacatctat
cgtctgcagaagttccagcgttcgaaccagaacacctgcgtcaaccagcgtccgctggtt
tccgtcggcgacatcatctccaagggcgatatcatcgcggacggtccgtcgaccgacctc
ggcgatctggctctcggccgcaatgcgctcgtcgcgttcatgccctggaacggctacaac
tacgaagactcgatcctgatgtcggagcgtatcgtttccgacgacgtgttcacctccatc
cacatcgaagaattcgaagtgatggcgcgcgacacgaagcttggtccggaagaaatcacg
cgcgacattccgaacgtttcggaagaagcgctgaagaacctcgacgaagccggtatcgtg
tacatcggtgcggaagttcagccgggcgacatcctcgtcggcaagatcacgccgaagggc
gaaagcccgatgacgccggaagaaaagcttctgcgcgccatcttcggtgaaaaggcttcc
gacgttcgcgacacctccatgcgcatgcctccgggcacgttcggtacggtcgtggaagtc
cgcgtcttcaaccgtcacggtgtggagaaggacgagcgcgcgatggctatcgagcgcgaa
gagatcgagcgtctggcgaaggaccgcgacgacgagcaggcgatcctcgaccgtaacgtc
tatggccgtctgatcgacatgctgcgtggtcaggtttcgattgccggtccgaagggcttc
aagaagggcgtcgagctctccaacgccgtcgtctccgaatatccccgctcgcagtggtgg
atgttcgctgtcgaagacgagaaggctcagtccgagctggaagcgcttcgcggccagtac
gacgaatccaagtcgcgccttgaacagcgcttcatggacaaggtcgaaaaggtccagcgt
ggcgatgaaatgcctccgggcgtcatgaagatggtcaaggtcttcgttgccgttaagcgc
aagatccagccgggcgacaagatggccggccgtcacggcaacaagggcgttgtctcgcgc
atcgttccggtcgaggacatgccgttcctcgaagacggcacgcatgtcgacatctgcttg
aacccgctcggcgtgccttcgcgcatgaacgtcggccagatcctcgaaacccatctcgca
tgggcatgcgcaggcatgggcaagaagatcggcgagatgctcgaagagtatcgcaagacg
atggacatcagcgagcttcgcagcgagctgacggaaatctacgcgtctgaagccaatgac
gaggttcagagtttcgatgacgactcgcttgtcaagcttgccgaagaagccaagcgcggt
gtttccatcgcgaccccggtcttcgacggtgcgcatgagcctgacgtcgccgcgatgctg
aagaaggcaggtctgcatgaatccggtcagtccgttctttatgacggtcgtaccggtgag
ccgttcgaccgtaaggtcaccgtcggctacatgtacatgatcaagctgaaccaccttgtt
gacgacaagatccacgctcgttcgatcggtccttactcgctcgttacccagcagccgctg
ggcggcaaggcgcagttcggcggtcagcgcttcggggaaatggaagtctgggctctggaa
gcatacggcgcggcttacacgctgcaggaaatgctcaccgtcaagtcggacgacgtggcg
ggccgcaccaaggtctacgaagcgatcgtccgtggcgacgacaccttcgaggccggtatt
ccggagagcttcaacgttctcgtcaaggaaatgcggtcgctgggtctttcggtcgaactg
gaaaactcgaagatcgagaaccagcccgaagaccagctgcccgacgcggcggaataa
DBGET
integrated database retrieval system
