Anolis sagrei ordinatus (Brown anole): 132765234
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Entry
132765234 CDS
T09595
Symbol
DDX39B
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
asao
Anolis sagrei ordinatus (Brown anole)
Pathway
asao03013
Nucleocytoplasmic transport
asao03015
mRNA surveillance pathway
asao03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
asao00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132765234 (DDX39B)
09122 Translation
03013 Nucleocytoplasmic transport
132765234 (DDX39B)
03015 mRNA surveillance pathway
132765234 (DDX39B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asao03019
]
132765234 (DDX39B)
03041 Spliceosome [BR:
asao03041
]
132765234 (DDX39B)
Enzymes [BR:
asao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
132765234 (DDX39B)
Messenger RNA biogenesis [BR:
asao03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
132765234 (DDX39B)
Spliceosome [BR:
asao03041
]
Complex C
Other components
EJC/TREX
132765234 (DDX39B)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
132765234 (DDX39B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
132765234
NCBI-ProteinID:
XP_060615450
LinkDB
All DBs
Position
Unknown
AA seq
428 aa
AA seq
DB search
MTENDVDNELLDYEDDEVENQAAGEGVDVPSKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPSVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNEVQDRFEVNISELPDEIDI
SSYIEQTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgactgagaacgacgttgacaatgagctgttggattatgaagatgatgaggtggaaaac
caggcagctggagaaggagtagatgtcccatctaagaaagacgtcaaggggtcctatgtc
tccattcacagttccggttttcgtgattttttgctaaaaccggaactcctccgtgccatt
gttgactgtggatttgagcacccctcagaagtgcaacatgaatgcatcccccaggcaatt
ttgggcatggatgtcctatgccaggccaaatccggtatgggcaagactgccgtctttgtt
cttgccacacttcaacagttggagccagtcacaggacaggtgtctgtgctcgtgatgtgt
cacacccgtgagctggccttccagatcagtaaagagtatgaacgcttttcgaagtatatg
cccagtgtcaaggtggcggtgttctttgggggcctgtccatcaagaaggatgaggaggtg
ctgaagaagaactgcccgcatatcgtggtgggaaccccgggccgcatcctcgctttggcc
cgcaacaagagcctcaacctgaaacatatcaagcatttcatcctggacgaatgcgacaag
atgcttgagcagcttgatatgcgccgggatgtccaggagatcttccgcatgacccctcat
gaaaagcaggtcatgatgttcagtgccactctcagcaaggaaatccgccccgtgtgccgc
aaattcatgcaagaccccatggagatcttcgtggacgatgagaccaagctgacgctgcac
ggtctgcagcagtactatgtcaaactgaaagacaacgagaagaaccgcaagctgtttgat
ctgcttgatgtactggagttcaatcaggtggtcatctttgtgaagtctgtgcagcggtgc
attgcactcgctcagctgctggtggagcagaacttccctgccattgccatacaccggggc
atgcctcaggaagagaggttgtcacggtaccagcagttcaaggatttccagcgccgtatc
ttggtggccacgaatctctttggtcgtggcatggacattgagcgggtcaatatcgctttc
aattacgacatgccagaagattcagacacttacctgcaccgggtggcgcgtgctgggcgc
ttcggcaccaagggcttggcgatcactttcgtgtcggatgaaaacgacgccaagattctc
aacgaggtgcaggaccgctttgaggtcaacatcagtgagcttcctgacgagattgacatc
tcctcctacattgaacagactcgataa
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integrated database retrieval system
