Australozyma saopauloensis: 88174275
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Entry
88174275 CDS
T10743
Symbol
PUMCH_003211
Name
(RefSeq) uncharacterized protein
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
asau Australozyma saopauloensis
Pathway
asau03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asau00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
88174275 (PUMCH_003211)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asau03019
]
88174275 (PUMCH_003211)
Enzymes [BR:
asau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
88174275 (PUMCH_003211)
Messenger RNA biogenesis [BR:
asau03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
88174275 (PUMCH_003211)
mRNA degradation factors
3'-5' decay
Ski complex
88174275 (PUMCH_003211)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
Ski2_beta-barrel
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
MTR4_beta-barrel
Motif
Other DBs
NCBI-GeneID:
88174275
NCBI-ProteinID:
XP_062878259
UniProt:
A0AAX4HBG6
LinkDB
All DBs
Position
4:402476..406201
Genome browser
AA seq
1241 aa
AA seq
DB search
METLDPNEILTCSSGHPKPANAIEQLTQELLEPSTTLTWDLLDLVQSVPTIDKNSLYEDL
FVAPTALCRTSFRLKREGIEGTVVGFKEEVRLADLDNANATNSLSINRKVGAKQNAVLGK
SSYLPFQPGGLFNQTSTNQKLNQVQQADTLYIHRNEAGLFDIAPGMLRGLNLEAYNAGAD
GITSLGLVEDAGANVDETVGQMDIDSNSKNALKALQNLGLDSELGIPELDDYVPSDFKAM
KDEMDAQARVKKDWAHVVDLNHKIENFEEVVPSMARVWPFELDTFQKEAVYHLEQGDSVF
VAAHTSAGKTVVAEYAIAMAARNMTKTIYTSPIKALSNQKFRDFKEAFKDMDIGLITGDV
QINPEANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDIERGVVWEEVIIMLPDH
VKYILLSATVPNTFEFANWVGRTKRKDIYVISTSKRPVPLEINIWAKNNLYTIINAQGKF
SEIEMKKHKEVLAGDTKTGPPSTTMGSGSRGGPGGTARGGNRGGGRGGGGGSRGNNARGG
GNRGGARGGAMQKSNNFVRDGPNKSTWSGLVQYLSQKKLLPVVIFVFSKKRCEDYVDTLS
GVSFCNAREKSEIHMFIDRAVSRLKKEDRELPQILKIRDLLSRGIAVHHGGLLPIVKECI
EILFAKSLIKVLFATETFAMGLNLPTRTVVFAELRKHDGRGFRNLHPGEFTQMAGRAGRR
GLDTTGTVIVMSYKQPLQPTDFKEVTMGKPSKLLSQFRLTYNMILNLLRIEALRVEEMIK
HSFSENSTQTLLPEHKSRVDALSLELEGIKLEENENSKAFLEAYNLMEEYKRTYSLMMAE
IQKLPNARQLHRVGKLMVFEDEDGAVRFGIMLKDDAANGRFVFLTFNHGEKYEEASKSIR
MPYIPCRKYLKKMMPQIEFNGDLRVTTVPIENVQFVSVFGSNVKPGAVLANKTDAVNEAI
ELFKTIIHFQYKPKESPYKQFLQLTLHELISKKDNVLEQIELNEVIKTPEFKNVYAQLRK
QDMIKQNIDSLNLLISDENLELLPDYNQRLEVLKQLDFIDQNQNVMLKGRVACEINSGWE
LVLTELILDNFLGDFEPEEIVALLSCFVYEGRTKDEEDLPITPRLEKGKQKIQQITEKLL
NIYTEHQVSLTSEEEEFLERKRFALVNVVYEWARGLAFNEIMQISVELEGTIVRVITRLD
EICRQVKNAALIVGDSKLHSKMSEAQERIKRDIVFCASLYI
NT seq
3726 nt
NT seq
+upstream
nt +downstream
nt
atggaaacattggatccaaacgaaatcctcacgtgcagcagcggccaccccaaaccagcc
aatgccatcgaacaactcacccaagaactcctagaaccatccaccaccctaacctgggac
ctcttggacctagtgcaaagcgtccccactatagacaagaacagtctctacgaagatctc
tttgtagcaccgactgcattgtgtagaacgtcatttcggctcaaaagagagggcatcgag
ggaacagttgtaggcttcaaagaggaggttcgccttgccgatctcgacaatgccaatgcg
acaaactcgctctcgatcaacagaaaggtcggcgcgaagcagaacgcggtgctgggcaag
tcgagctacttgccgttccagccaggcggactattcaaccagacatctaccaatcagaag
ttaaaccaggttcagcaggcagatactctgtatatccacagaaacgaagctggtctcttt
gatattgcgccgggaatgctgcgcggtttgaatttggaggcgtacaatgccggcgccgat
ggcatcacctctttgggccttgtagaagacgccggcgccaacgtagacgagaccgtgggt
caaatggatatagatagcaacagtaagaatgcgctgaaggcgctgcagaatttgggcttg
gactcggagttggggatccctgagcttgacgactatgtgcctagcgacttcaaggcaatg
aaggacgaaatggatgcccaggcgcgggttaagaaagactgggcgcatgtcgtcgatttg
aaccacaagattgaaaatttcgaggaggtggttcccagcatggcccgtgtgtggcccttc
gagctagataccttccagaaggaagccgtgtaccacctcgaacagggtgactctgttttt
gtggctgcacacacctccgccggtaagacggtggttgcagaatacgccatcgccatggct
gccagaaacatgaccaagaccatctatacctcgcctattaaagccttgtccaaccagaag
ttcagagatttcaaggaggccttcaaagacatggatatcggcttgatcacgggtgacgtc
caaattaacccagaggcaaattgtctcattatgaccacggagatcttgcgttcgatgctt
taccgtggtgcggatctcatcagagacgtcgagtttgtgatcttcgacgaggtccactat
gtcaacgatatcgagcgtggtgtcgtctgggaagaggtcatcatcatgcttccggatcac
gtaaagtatattctcttatccgcgacggttcctaacacatttgaattcgccaattgggtg
ggtagaacaaagcggaaagacatctatgtcatttctacatccaagagacctgtgccgttg
gaaatcaacatttgggctaagaacaatctctacacaattataaacgcccaggggaagttc
agtgaaatcgaaatgaagaagcataaagaagtcctcgctggtgacaccaagacaggccct
cctagcacaacaatgggctctggttctagaggaggaccgggcggtactgcccgtggaggt
aaccgaggcggcggtagaggtggaggcggaggttccagaggcaacaatgcccgtggcggc
ggaaatcgtggtggagccagaggaggcgctatgcaaaagagcaataatttcgtcagagat
ggccctaacaaaagtacatggtctggattggtccaatatcttagtcaaaagaagcttctc
ccggtcgtgatctttgttttttccaagaaacgatgcgaggattacgttgacaccttatca
ggcgttagtttctgtaatgcgagagaaaagagtgaaatccacatgttcattgatagagca
gtctctcgattgaagaaagaagaccgcgaattacctcaaatcctaaagattagagacttg
ctcagcaggggtattgctgtccaccatggtggccttcttcccattgtcaaggagtgcatt
gaaatattgtttgcaaagtctcttatcaaagttttgtttgcaaccgagacttttgcgatg
gggttgaatttgccaacacgtactgttgtatttgccgagcttagaaagcatgatggtaga
ggcttccgtaacttgcatcccggtgaattcactcagatggcaggaagagcaggaagaaga
ggtttggatactacaggtactgtgattgtcatgtcgtacaaacaacctcttcagcccacc
gatttcaaggaagtcacaatgggtaagccatccaagcttctgtcacaattcagattgaca
tacaatatgatcttgaatttgctcagaatcgaagccttacgtgtggaagagatgattaaa
cattcgttcagtgaaaactccacccaaaccttgctaccagaacacaagagtagagtggat
gctttgagtcttgagttggaaggaatcaagcttgaagaaaacgaaaactccaaggcattt
ttggaagcgtacaatctcatggaagaatacaaaagaacgtacagtctgatgatggcggaa
atccaaaagctgccgaatgccagacagcttcatcgtgtcggaaaactcatggtatttgaa
gatgaagatggtgctgttcggtttggaataatgcttaaggatgatgccgctaatggcaga
ttcgtattcttgacatttaatcatggtgaaaagtatgaagaagccagtaagtccatccgc
atgccatatataccatgcagaaagtacctcaagaagatgatgccgcagatcgaattcaat
ggagacttacgagtgacaacggttccgatcgagaatgttcaattcgtcagtgtgtttggt
tcaaacgtcaagcccggagcggtcttggcaaataagacggatgccgtcaatgaggcaatt
gagctgtttaaaaccatcattcacttccaatacaaaccaaaggaatcgccatacaagcaa
ttccttcagttgacattgcatgagctcatcagtaagaaggacaacgtcttagaacagatt
gagctgaacgaagtcattaaaactccggaattcaagaatgtttacgcccagttgcgcaaa
caagatatgattaagcagaacatcgattccttaaatttgcttatatctgatgagaacttg
gagcttcttccagactacaaccagagactagaggttcttaagcaacttgatttcattgac
cagaaccaaaacgttatgttgaagggtcgtgttgcatgtgaaatcaactctggttgggag
ttggtactcaccgaattgattcttgacaatttcttgggagactttgagccagaagaaatt
gttgctctcttgtcatgtttcgtgtacgaaggaagaacaaaggatgaagaggatctcccc
ataacaccaagattagaaaagggtaagcaaaagattcaacagattaccgagaagttatta
aatatctacactgagcaccaggtctctttgacttccgaagaagaggagtttttggagcgg
aaacgttttgcattggtcaatgtggtctatgaatgggctagaggtctagcttttaatgag
attatgcagatcagtgtcgagctggagggaaccattgtcagagtcattacacgtttagat
gaaatttgcagacaagtgaagaatgctgcattgattgtgggtgactcgaaattgcattca
aaaatgtccgaggcacaagagcgcatcaaaagagatatcgttttctgtgcttctttatat
atataa
DBGET
integrated database retrieval system
