Candidatus Arthromitus sp. SFB-rat-Yit: RATSFB_0090
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Entry
RATSFB_0090 CDS
T01624
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
asb
Candidatus Arthromitus sp. SFB-rat-Yit
Pathway
asb03420
Nucleotide excision repair
asb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
asb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RATSFB_0090
03430 Mismatch repair
RATSFB_0090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
asb03400
]
RATSFB_0090
Enzymes [BR:
asb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RATSFB_0090
DNA repair and recombination proteins [BR:
asb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RATSFB_0090
MMR (mismatch excision repair)
Other MMR factors
RATSFB_0090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
UvrD_C_2
DEAD
ResIII
Viral_helicase1
UvrD_C
AAA_18
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
BAK80652
UniProt:
G2IFS4
LinkDB
All DBs
Position
117032..119125
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AA seq
697 aa
AA seq
DB search
MDFRGMDVKLDYEIEKKYLDNVLGYLNDKLSEYVENRKNISDSIVDYRKKFIEEYRDDDD
KIIDYFDHENYKNEQIFMLVEKKIKEILYLKKTPYFGKIVISEDGEEEKFYIGSYGFDIG
LELPLIIDWRAPMASLFYQGRIGELSYKIPSGEEICVSLNERIQFLIRDGKIISMFDSDI
DIKDEFLKEMLSLKSSNKLKNIVQTIQVNQDKIIREDRNKSIVINGVAGSGKTSVALHRI
AYLLYNFRDYFEDRVLILCPNKIFMEYISAVLPSLGEYGGVHSYTSEDFIYLSTGGNLNF
NSYDSHMEKILNDKEYLDEFKFKGSYEMKCEIDKFISYVEENINLGGDIYFRDELIINYE
ELNRLFYESFKSRSIDVRINLIKKRIFDKINKVRNTFVRQIKDKYKSMNTDSDMENYYDM
LMRNEIYDVVRDSSDIKSSLHYLKLESPYELYREFYESYFSKDLVNLDFGDLILIKYIDI
NIYRPKKDREYRLVVIDEGQDFSYMFYQVIKMYTESPSYLIVGDLNQSIIKFEDNFTHST
RIFENKKDFEMLDSYRSTKNIIDYSLKYLNDRISVNSIRDGEDVTYFECEYDDIKKILIE
AINNLKSKNIGIIVLDKRMINKVHDMIKSNFYIKTITDEDHVYSDNGIFLTTVYFSKGLE
FDSVIVIDSGFEDNILYIMLTRAMHDAIHIKIKNVIP
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
gtggattttaggggtatggatgtaaaattagattatgaaattgagaagaaatatttagat
aatgtacttggttatttaaatgataagttaagtgagtatgtagaaaatagaaaaaatata
tcagattctattgttgattataggaagaaatttatagaggaatatagagatgatgatgat
aaaataatagattacttcgatcatgaaaattataagaatgaacagatatttatgcttgtt
gaaaaaaagatcaaggagatactctatctaaaaaaaactccttactttgggaagattgtt
ataagtgaggatggggaagaggaaaaattttatataggatcttatggatttgatattgga
ttagaactccctttaataattgattggagagcacctatggcttctttattttatcaaggg
aggatcggagaacttagctataagataccatctggagaggagatttgtgtttctttaaat
gagagaatacaatttttgattagagatggtaaaataatttcgatgtttgattcggatata
gatattaaggatgaatttttaaaagagatgctatctttaaaatcctcaaataaattaaaa
aatatagttcaaactattcaggttaaccaagataaaataataagggaagatagaaacaaa
tcaattgtgataaatggtgtagcaggaagtgggaaaacttctgtagcacttcatagaata
gcttatcttttatataattttagagattattttgaagatagagttctaatattgtgtcca
aataaaatttttatggaatatatatctgcagttcttccatctcttggagaatatggagga
gtacatagttatacaagtgaagattttatttacttaagcactggtggaaatttaaatttt
aattcttatgattctcatatggaaaagatattaaatgataaagaatatctagatgaattc
aaatttaagggaagttatgagatgaagtgtgagatagataaatttatctcatatgttgag
gagaatataaatctcggaggagatatttattttagagatgaacttattataaattatgaa
gagttaaatagattattttacgaatcttttaagagtcgttctatagatgtaagaataaat
ctgataaaaaagagaatatttgataagataaataaagttagaaacacatttgtgcgtcaa
ataaaggataagtataagagcatgaataccgattcggatatggaaaattattatgatatg
cttatgagaaatgaaatatatgatgtggtaagagatagtagtgatataaaatcatcgttg
cattatttgaaattagaatcaccctatgaattatatagagaattttatgagagttatttt
tcaaaggatttggttaatttagattttggggatttaatacttataaaatatatagatatt
aatatttatagacctaagaaagatcgtgaatatagacttgttgtaattgatgaaggtcaa
gatttttcgtatatgttttatcaagttataaagatgtatactgagtcaccatcttattta
atagttggagatttaaatcaaagcattataaaatttgaggataattttactcatagcact
cgtatatttgaaaataaaaaagattttgaaatgcttgattcttatagatcgactaaaaat
ataatcgattattctttgaaatatttaaatgatcgaatttctgtaaattcaataagagat
ggggaagatgttacatattttgaatgtgagtatgatgatataaagaaaatattgattgaa
gctataaataatttaaaatccaagaatatagggataattgttttagataaaagaatgata
aataaagtacatgatatgataaaatctaatttttatataaagacgattacagatgaggat
catgtttatagtgataatggaatatttttgactactgtatatttttcaaagggacttgag
tttgattctgttatagttattgattcagggtttgaggataatattttatatataatgcta
acaagagcaatgcatgatgctattcatataaagataaaaaatgtaataccttag
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