Candidatus Arthromitus sp. SFB-rat-Yit: RATSFB_0410
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Entry
RATSFB_0410 CDS
T01624
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
asb
Candidatus Arthromitus sp. SFB-rat-Yit
Pathway
asb03410
Base excision repair
asb03430
Mismatch repair
asb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
asb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RATSFB_0410 (recJ)
03430 Mismatch repair
RATSFB_0410 (recJ)
03440 Homologous recombination
RATSFB_0410 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
asb03400
]
RATSFB_0410 (recJ)
DNA repair and recombination proteins [BR:
asb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
RATSFB_0410 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
RATSFB_0410 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RATSFB_0410 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
TusA
Motif
Other DBs
NCBI-ProteinID:
BAK80972
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All DBs
Position
485498..487270
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AA seq
590 aa
AA seq
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MLERWILRNRNTLVEGLETLKISNKILKILINRDFKNFDDIKNYIYPSEVLLNDPFKLKD
FQKAIDILISLVESGDRLRIVGDYDVDGISSVYILYRTFKNIGINVDFVIPDRVKDGYGI
NTRIVSEAKNDGIKFLITCDNGIAAIDVIKFAKENGFTIIVTDHHDIQIVNGENGNFEKV
LPDADVILNPKQDDCTYEFKKLCGAGVCFKLCCELYRKFGLENKINELIEITAIATICDV
VDLEGENRFLAKKGIELLRTTNNIGLNAIIDVNSISRENICSYDIGYVIGPCLNALGRLD
SGMKGLDILLCDDKEKAYELASEIKDLNDKRKSMTLEGFVESLKIIKEENYLNSNVIVIY
NENIHESIAGIIAGRIKERFYKPTIVLTKGEGCCKGSARSIEGINIFDLISENRDLLEAF
GGHPMAAGLSIKEENINLFRDRLNKSSRIDKDKYINTVYIDIFCPIQEIDYDFVKDLDKL
EPFGKSNLKPVIGDKHLRVYSIKRIGKNKNYISIKLISTDDKIFDFVYFGDAEEFDKSFS
NSYSRVELERLYSGKCNMNNQFFIDVLYEVSIDNYNFSEMIKYFLLKYRF
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
atgttagaacggtggattttgaggaatagaaatactttggttgaaggattagaaacgctt
aaaatatctaataaaattttgaaaatacttataaatagagattttaaaaattttgatgac
attaaaaattacatatatccgagtgaagttttgttgaatgatccatttaaattaaaagat
tttcaaaaggctatagatattttgatttcattagttgagagtggagataggttaagaatt
gttggagattatgatgttgatggtataagtagtgtttacatattgtatagaacttttaaa
aatattgggattaatgttgattttgtaatacctgatagagttaaagatggttatggaata
aatacaaggatagttagtgaagcaaagaatgatggtattaaatttttaattacatgtgat
aatggaattgctgctattgatgtaataaaatttgcaaaagaaaatggatttacgataatt
gtaactgatcatcatgatattcaaattgttaatggtgagaatggaaattttgaaaaggtt
ttgccagatgctgatgtgattttgaatccaaagcaagatgattgtacatatgagtttaaa
aaactttgtggtgcgggagtttgttttaaactatgttgtgagttatacaggaagtttgga
ttggaaaataaaataaatgagttgattgaaataactgccattgcaactatttgtgatgtt
gtagatttggaaggggaaaatagatttttagcaaagaaaggtattgagttattgaggaca
acaaataacattgggcttaatgctataatagatgtaaattctatatcgagagaaaatatt
tgttcatatgatataggttatgtgattggtccgtgtttaaatgctttgggaagacttgat
agcggtatgaaaggattggatatccttttgtgtgatgataaggagaaggcttatgagctt
gcaagtgagataaaagatttaaatgataaaaggaagtccatgaccttagagggatttgtt
gaaagtttgaaaataattaaagaggagaattatcttaattcaaatgtgattgttatctac
aatgaaaatattcacgaaagcatagcgggtataattgctggaagaatcaaagagagattt
tataaacccacgattgttttaacaaaaggtgagggatgttgtaagggatcggctaggtcg
attgaaggaataaatatttttgatttaatctctgagaatcgagatttacttgaggctttt
ggaggacatcctatggcagcaggattatctataaaagaagagaatataaatttgtttaga
gatagattaaataagtcgagtagaattgataaagataaatatataaacactgtatatatt
gatattttttgtccaattcaagaaatagattatgattttgttaaggatttagataaactt
gagccgtttgggaaatcaaatctaaaaccagttattggcgataagcatttgagagtgtat
tctatcaagagaattggaaaaaacaagaattacatttctattaaattaatttctacagat
gataaaatttttgattttgtatattttggggatgctgaagaatttgataaatcatttagt
aattcttattcaagagttgaacttgagaggttgtattccggaaaatgtaatatgaacaat
caattttttattgatgttttgtatgaagtgagtatagataattataattttagtgaaatg
ataaagtatttcttattaaaatatagattttaa
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