Candidatus Arthromitus sp. SFB-rat-Yit: RATSFB_1114
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Entry
RATSFB_1114 CDS
T01624
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
asb
Candidatus Arthromitus sp. SFB-rat-Yit
Pathway
asb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RATSFB_1114 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
asb03021
]
RATSFB_1114 (rho)
03019 Messenger RNA biogenesis [BR:
asb03019
]
RATSFB_1114 (rho)
Transcription machinery [BR:
asb03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
RATSFB_1114 (rho)
Messenger RNA biogenesis [BR:
asb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
RATSFB_1114 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
S1CSD-TOTE-2
Spore_III_AA
NACHT
Motif
Other DBs
NCBI-ProteinID:
BAK81676
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All DBs
Position
complement(1280082..1281485)
Genome browser
AA seq
467 aa
AA seq
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MNIVKLEEMSLSELRKSAKTLDIKNYSKLKKNELIHKISELSPTIVEKDGVILVEKIKLK
MNKVSEQNSIVSDENVRDKSDKFQDMILNSENANGVLEINDNNSFGFLRGKNYLTSTEDV
YVSPSQIRRFNLKTGDHIIGKVREPKDGEKYRALLYVERINGFLPDEALNRKNFEELTPI
YPNERLKLESGEKSDLSTRLMDIICPIGKGQRGMIVAPPKAGKTSILKKIAQNILKNNKD
IKLIILLIDERPEEVTDMQRTIGGGEVIYSTFDEEPSQHVKVATMVLERAKRMVEHGKDV
FILMDSLTRLARACNLTIVPTGRTLSGGLDPGSLRIPKKFFGAARNFEQGGSLTILATAL
VDTGSRMDDMIFEEFKGTGNMEVHLDRKLQERRLFPSIDIYKSGTRKEDLLFTNDEKEVS
FYLRRIMHKEGNSENIMESLIKVFQNTKNNKEFIEYYKSIIDKDDNK
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgaatattgtaaaattagaagaaatgtctttatcggagcttaggaaatctgccaagact
cttgatattaaaaattattctaaattaaaaaaaaatgaacttattcataaaatttctgag
ttatccccaaccatagttgaaaaagatggtgttattttagttgaaaaaataaaattaaaa
atgaataaagtaagtgaacaaaattcaattgtttctgatgaaaatgtacgggataagtcg
gataagtttcaagatatgatattgaattctgaaaatgccaatggtgttttagaaataaat
gacaataatagttttggatttttaagaggaaagaattatttaactagcacagaggatgtt
tatgtttctccttctcaaataagaagatttaatttaaaaacaggggatcatataatagga
aaagttagagaacctaaggatggagagaagtatagggctcttttatatgttgagaggatt
aacggttttttaccagatgaagctttaaataggaaaaattttgaggaacttacacctatt
tatccaaatgaaagattaaagcttgagagtggagagaaaagtgatttatcaaccagatta
atggatataatatgtcctataggtaaagggcaacgaggaatgatagttgcacctcctaag
gcaggtaaaacaagtatattaaagaagatagctcaaaatattttaaaaaataataaggat
ataaaattaataattttacttatagatgaaagacctgaggaagttactgatatgcaaagg
acaattggaggaggagaagttatttattctacctttgatgaggaaccaagtcagcatgtt
aaagttgctacaatggtacttgaaagagctaagcgtatggttgagcatgggaaggacgta
tttattttaatggatagtttgactagacttgcaagagcttgcaatttgacaattgtacct
acaggtaggactttatctggtggacttgacccaggatcattgagaatacctaaaaagttt
tttggagctgcaagaaattttgaacaaggtggaagtcttacgatacttgcaacagctctt
gttgatacgggatcaagaatggatgatatgatatttgaagaatttaaaggaactggaaat
atggaagttcatttagatagaaaattacaagagagaagattatttccaagtattgatata
tataagtcgggaactcggaaagaggacttgttgtttacgaatgatgaaaaagaggtatcc
ttttatttaagaaggataatgcacaaagaaggtaattctgaaaatataatggaaagtctt
ataaaggtatttcaaaatactaaaaataataaagaatttattgagtattataaatctata
attgataaggatgataataaataa
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