Candidatus Arthromitus sp. SFB-rat-Yit: RATSFB_1231
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Entry
RATSFB_1231 CDS
T01624
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
asb
Candidatus Arthromitus sp. SFB-rat-Yit
Pathway
asb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
asb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RATSFB_1231 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
asb03021
]
RATSFB_1231 (rpoC)
03400 DNA repair and recombination proteins [BR:
asb03400
]
RATSFB_1231 (rpoC)
Enzymes [BR:
asb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RATSFB_1231 (rpoC)
Transcription machinery [BR:
asb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RATSFB_1231 (rpoC)
DNA repair and recombination proteins [BR:
asb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RATSFB_1231 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
PA_decarbox
Motif
Other DBs
NCBI-ProteinID:
BAK81793
UniProt:
G2IF69
LinkDB
All DBs
Position
complement(1397878..1401438)
Genome browser
AA seq
1186 aa
AA seq
DB search
MVELNNFDAIRIGLASPEQIREWSRGEVKKPETINYRTLKPERDGLFCERIFGPTKDWEC
HCGKYKRVRYKGIVCDRCGVEVTKSKVRRERMGHIELATSVSHIWYFKGTPSKMALLLEM
QARVLEKILYFASYVILDPKEVSVLQKGQILSEKDFREYSEKFGEGSFEVGMGAEAIKQL
LMDLDLDSLSTKLKEELKNSTGQKRARIIRRLEVVESFRKSNNRPEWMIIDVIPVIPPEL
RPMVMLDGGRFATSDLNDLYRRVINRNNRLKKLLDLKAPDIIVRNEKRMLQESVDALIDN
GRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKLYQCGLP
KEMALELFKPFVMKKLVDSGIAHNIKAAKRMVEKNMNQVWDILEEVITDHPVLLNRAPTL
HRLGIQAFQPVLVEGRAIKLHPLVCTAYNADFDGDQMAVHVPLSMEAQAEARFLMLAAVN
ILKPSDGKPVCVPSQDMILGSYYLTMDNPKFDQENIKSYSNSEEAIMAFELGYLNIHEKI
KLKVKKNIDGETKTKLIETTVGKIIFNESIPQDLGFVDRDKEENLFKFEIDFLVNKSKLT
EIVDRCYLKYGPSETASMLDQIKTKGYHYSTIGAITVAASDMIVPKEKESIIKESEEKVD
IVSKKFRRGLMTEDERYNSVIEIWNSTTDKIADVLMNSMDKFNPISMMADSGARGSKSQI
KQLAGMRGLMSNPSGKIIELPIKASFREGLDVLEYFTSTHGARKGNADTALKTADSGYLT
RRLVDVSQDVIIRSEDCGTLDGIYVSEIKDDNSVVESLSERLIGRYVAEDILDPKTNNIL
IKRDQYITNDIAKIISDINEDDNRDETEKILRVKIRSVFTCDSRIGVCAKCYGMNMATAR
EINIGESVGIIAAQSIGEPGTQLTMRTFHTGGVVGADITQGLPRVEELFEARKPKGLAIV
SEISGIVEFENTKKKRVVKIISNDGEVIEYDIPFGSRVKVDNGMSIEAGSIITEGSINPQ
DILRIKGIDAVREYLLSEVQKVYRLQGVDINDKHLEVIIKQMTRKVRVIEAGDTDILPNS
IVDISYFNDENMRVKKEGLNEAECERVLLGITKASLSTESFLSAASFQETTKVLTDAAIK
GKIDPLVGLKENVIIGKLIPAGTGMNHYRSMKVNYGDEENIEYDMT
NT seq
3561 nt
NT seq
+upstream
nt +downstream
nt
gtggttgaattaaataattttgatgccataagaataggtttagcatctcctgaacaaatt
agagaatggtctaggggagaggtgaagaagcctgagaccataaattatagaactttaaaa
ccagaaagagatggtcttttttgtgaaagaatatttggacctacaaaagactgggagtgt
cattgcggaaagtataaaagagttagatataaaggtattgtttgtgatagatgtggtgtt
gaggttactaagtcaaaagttagacgtgaaagaatggggcatattgaattagcaacatct
gtatctcatatatggtattttaaaggtactccttcaaagatggcattattgcttgaaatg
caagcgagagttttggaaaaaatactttattttgcttcatacgttatattggatccgaag
gaagtaagtgtattgcaaaaaggacaaatattatcagaaaaagattttagagagtatagt
gaaaaatttggagaaggttcatttgaagttggtatgggggctgaggctataaaacagctt
cttatggatttggatttagatagtttatcaactaaacttaaagaagagttgaaaaatagt
actggacaaaaaagggcaagaataattagaagacttgaagttgttgagtcttttagaaaa
tctaataatagaccagaatggatgataatagacgttataccagttataccacctgaactt
agaccgatggtcatgttagatggaggaagatttgctacatctgatttaaatgatttatat
agaagggttataaatagaaataatagattaaaaaaattgttggatttaaaagcacctgat
ataatagtcagaaatgaaaaaaggatgcttcaagaatctgttgatgctctaatagataat
ggtagaaggggtagacctgtaactggaccaggtaatagaccgctcaaatctttatcagat
atgcttaaagggaagcaaggtagatttagacaaaatcttttaggtaaacgcgttgactat
tctggaagatctgtaatagttgttggaccagaattaaaactttatcaatgtggattacct
aaggaaatggcattagaacttttcaaaccatttgtaatgaaaaaattagtagattcagga
atcgctcataatattaaagcagcaaaaagaatggttgaaaaaaatatgaatcaagtttgg
gatattttagaggaagttataacagatcatccagttttattaaatagggctccaacatta
catagattaggaattcaagcttttcaaccagttttagttgaaggaagagctataaaattg
catccgcttgtttgcacagcttataatgctgattttgacggagatcaaatggctgtgcac
gttccattatccatggaagcacaagcagaggctaggtttttaatgttagctgctgttaat
atattaaagccttctgatggtaaaccagtgtgtgttccatctcaagatatgattttagga
tcgtattatttgacaatggataatccgaaatttgatcaagaaaatataaaatcttattct
aattcggaggaggctataatggcttttgaattaggatatttaaatatacatgaaaagata
aagcttaaagttaaaaaaaatatagatggagaaacaaagactaagctaatagaaacaact
gttggcaaaatcatatttaatgaatcaatacctcaggatcttggatttgttgatagagat
aaagaagagaatttgtttaaatttgagatagactttcttgttaataaaagtaaactaaca
gagatagttgatagatgttatttaaaatatggaccatctgaaacagcatctatgcttgat
caaattaaaacaaagggatatcattattcaactataggggcaataacggttgctgcatct
gatatgatagttccaaaggaaaaggaaagtataattaaagaatcagaagaaaaagttgat
atagtaagtaagaaatttagacgtggacttatgacagaggatgaaagatataattcagtt
atagaaatttggaatagcacaactgataaaatagcagatgttcttatgaatagtatggat
aaatttaatcctatatctatgatggctgattctggggctagaggttctaaaagtcaaata
aaacaacttgctggtatgagaggacttatgagcaatccatcaggtaagataatagagctt
ccaataaaggcttcttttagagaggggctcgatgtattagaatattttacgtcaacacat
ggagctaggaagggaaatgcagatacagccttaaaaacagctgactctggatatttaaca
agacgtctagttgatgttagtcaagatgttataataagaagtgaagattgtggaacttta
gatggtatttatgtgagcgaaattaaggatgataattccgttgttgagagtttaagcgaa
aggcttatagggagatatgtagctgaagatatacttgaccctaaaactaataatatatta
ataaaaagggatcaatacataacaaatgatatagctaaaattatatctgatattaatgaa
gatgataatagagatgaaactgaaaagatattgagagttaaaataagaagtgtattcact
tgtgattctagaattggtgtttgtgctaaatgttatggcatgaatatggctacagctaga
gaaattaatataggagaatcagttggtataatcgccgcacaatctattggagaacctgga
acacagctcacaatgagaacttttcatacgggtggagttgttggtgctgatataacacag
gggttaccaagagttgaagaattgtttgaggctaggaagcctaaaggacttgcaatagtt
tcagagatatcgggtattgtagaatttgaaaatactaagaagaagagagttgttaaaatt
atatcaaatgatggtgaggttatagaatatgatataccctttggatccagagtaaaggtt
gacaatggtatgagtatagaagcgggttctataattactgagggatctataaatcctcag
gatatactaagaataaagggtatagatgctgttagagagtatttattatctgaggtacaa
aaggtttatagattacaaggtgttgatataaatgacaaacatcttgaagtaataataaag
cagatgactagaaaagttagagttatagaagctggagatacagatatactcccaaattct
attgtagacatatcatattttaatgatgaaaatatgagagttaaaaaagaagggcttaat
gaagcagaatgtgagagagttttattgggaataacaaaagcttctctatctactgagtct
ttcttgtcagcagcatcatttcaagaaactacaaaagtattaactgacgcagcaataaaa
ggcaaaatagatcctttagtaggtctgaaagaaaatgtaataataggaaagttaatacca
gcaggtacgggtatgaatcattatagatctatgaaagtaaattatggagatgaggaaaat
atcgaatatgatatgacttga
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integrated database retrieval system
