Acidilobus saccharovorans: ASAC_0551
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Entry
ASAC_0551 CDS
T01283
Name
(GenBank) ATP-dependent helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
asc
Acidilobus saccharovorans
Pathway
asc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ASAC_0551
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asc03019
]
ASAC_0551
03400 DNA repair and recombination proteins [BR:
asc03400
]
ASAC_0551
Enzymes [BR:
asc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ASAC_0551
Messenger RNA biogenesis [BR:
asc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ASAC_0551
DNA repair and recombination proteins [BR:
asc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
ASAC_0551
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
Cas3-like_C_2
ResIII
Oxidored_q6
HTH_PafC
Motif
Other DBs
NCBI-ProteinID:
ADL18958
UniProt:
D9Q0X0
LinkDB
All DBs
Position
complement(545301..549332)
Genome browser
AA seq
1343 aa
AA seq
DB search
MQEAVLAAGAAAAAGAATYVAYRKRLLSRLLTSLRLKVNPDSIVEVASSAESLGISRQQV
SAIVRSLRSCPKGSERLAESLISLGLYEDVIYLASRGCSVPSVTLRRARAYSLGLALSKW
EAEASRLLQEQPKLSGSSKVMVAVCEGDYREVMVDGVVTEVPPPGSSWRSPPPEEAMSSI
AELSGAKLVISWGSCGLRGAVNARRLVRLAYPDVRPSLASIAYNLGVNPMLPPSAVVLAA
VESSVDILNRVGVEWEKMPEDVRGASEIVKYRDVVNSVVGQRGVKEQRSIVVTDRPRAYM
PLWRPFSVSPSRAPQDDYVAATVIKALASRGGDPLRAIRLSSLDGDEGRSIAKAIMASLV
QTAAGPRPGSQVEPWDLACLDDIEVLLDCARTYDDCIPSRPPPDEEELLRKLKVRCPGAK
NIRLTANSYVPQRLAESLGMAAPNKGKVKAYGEPILGGLRGASEAVSSAVAMASGASRPL
IIVPTRALARAAASAHGGTFITAETIDSWFSRGGLGFISWDDYLAMPEAGGVADRSIIVF
PERLIRAEPEDTAYGVHDRLVDSVIELVAKNGGLAVSRALHAEAERRDDIELVAPARHEI
DVELSDTDIMEEAENAFKRLWGANLSLRPYQGLAVRVLAQMASSGRASALMVILPTGAGK
SAIFQVTAKAFEDLGLGSTAIVISPLRALMHDQVKNARSRGLRAAYIDSSVPPSRKREII
AAAREGLLDLVYVTPEGFSSGPASELVSTSGEASLVVLDEAHALSRWGLSFRPSYLYVAR
QLKDRASAGWPPIVALTASAPSDVVRDVLSELGYQDYEERRISLGPETAEVSYSGKPVVL
RAPSLRPEISIDVVPARDGPDRLEDIAAHAEELTRWADSLGGPWVGIVFVPFVQSDSRPW
LNAEEVAKFLGRRLGEDIAVYHGQLSDSERRRVEEEIVSSSRTGRGPRIVVATKAFGMGV
DIPNIRWTLHAAPSGSVEDLYQEIGRAGRDGKPARAVILYNPSDMTVQSAMAKGEAIRPL
SVHRTLQLIAEAMQYVKYRDGVIPIPIKGREGEWGLVKYLDVLRVAGLIDYEVVRGPLLA
YDLPREKVEEEAGWCIPMSDGTCISRAVRGLEGRRVYFNICDNDASIGLKAQEACKSISY
DGLVALVSVTSGWRRPRRYLDPELYAISLWLSLREGRKVKELSDLLEAAVAARARGGQQL
ADSQVKRAIEELLARGVRPPLGGVRLGKVVRCDSLDECVDRAIKDVIEVEELVGEGSVVI
GASPTAAPLVSARYLKLTGRSPSVSPSYYRRLASLARRGELEKAMNMGYVVVVAKDSEKV
NEVVKLVHGYPYASFYLYARSKA
NT seq
4032 nt
NT seq
+upstream
nt +downstream
nt
gtgcaagaggccgtcctagctgcaggtgcagcggccgctgcgggcgcggcgacctatgta
gcctacaggaagaggctgctgtcaaggctcctcacctccctgaggctgaaggtgaacccc
gacagcatagtcgaagtggcctcctctgccgagtccctaggcataagcaggcagcaggtc
tccgctatagtgaggtccctgaggtcgtgccccaagggctcggagaggctggcggagtcg
ctcatctcccttggactttacgaggacgtcatatacctggcctcaaggggctgctcggtg
ccctccgtcaccctccgcagggcgagggcctactcacttgggctggcgctctccaagtgg
gaagccgaggcgtcaaggctactgcaggagcaaccaaagctctccggcagctcaaaggtc
atggttgctgtgtgcgagggcgactacagggaggtcatggtagatggcgtcgtaaccgag
gtgccgccgcctgggagctcatggaggtccccgccgccggaggaggcaatgagctccata
gctgagctctcaggggcgaagcttgtcataagctggggcagctgcggcctcaggggggct
gtaaacgccaggaggctcgtgaggctggcctaccctgacgtgaggccctcgctggcgtca
atagcctacaacctaggggttaaccccatgcttcccccgtcagccgtggtccttgcagcg
gtcgagagctcggttgacatactgaacagggttggggtcgagtgggaaaagatgcccgag
gacgtgaggggcgcctccgaaatagtcaagtatagggacgtggtgaactccgtcgtgggg
cagcgcggcgtcaaggaacagcgctccatagttgtcacggacaggcccagggcctacatg
ccgctgtggaggccgttctcggtgagcccctcgcgggccccccaggacgactacgtggca
gctacagtcatcaaggcgctggcctcaaggggaggcgaccccctgagggccatcagactc
tcaagccttgacggcgacgagggcaggtcaatagctaaagccataatggcctccctggtg
cagacggccgcaggcccaaggcctggcagccaggttgagccgtgggacctggcgtgcctc
gatgatatagaagtcctacttgactgcgctcgcacctacgacgactgcatcccctcaagg
cctccgcctgacgaggaggagctccttaggaagctcaaggtgaggtgccccggagccaag
aacataaggctcaccgccaactcttacgtcccccagaggctggcggagtccctcggcatg
gcggcccccaacaagggcaaggtgaaggcctacggcgagcccatattgggcggcctcagg
ggggcctctgaggcggtgtcgtcagctgtcgccatggcctcgggggcctccaggccgctg
ataatagtcccaacgagggccctcgccagggcggccgccagcgcccacggaggcacgttc
ataactgctgaaaccatagactcctggttctccaggggaggcctgggcttcatatcatgg
gatgactacctggccatgcctgaggccgggggcgtggccgaccgctccattatagtgttc
cccgagaggctgatcagagcagagcccgaggacacggcatatggcgtccacgacaggctt
gtggactccgtcatagagcttgtggccaagaacgggggcctggcggtcagcagggccctc
cacgccgaggccgagaggagggacgacatagagctggtggcaccggcgaggcacgagatt
gatgtggagctcagcgacactgatataatggaggaggccgagaacgcgttcaagaggctc
tggggcgccaacctgagcctgaggccctaccagggcctcgccgtgagggtgttggcccag
atggcctcctcgggcagggcctcagcgctgatggtcatacttcccactggggccgggaag
agcgcgatcttccaggtgactgcgaaggccttcgaggacctgggactggggtcaacggcc
atagtgataagccccctgagggcgctcatgcacgaccaggtgaagaacgccaggtcgagg
gggctcagggccgcctacatagactcgagtgtgccgccttcaaggaagagggagataata
gccgctgccagggagggtctcctggacctggtctacgtgacgcccgagggcttcagctcg
gggcctgcctccgagctggtgtcaacctcgggcgaggcgagcctcgtggtgctcgacgag
gcccacgccctctcaaggtgggggctcagcttcaggccaagctacctgtacgtcgccagg
cagctcaaggacagggcctcggccgggtggcccccgatagttgccctcaccgcctcagct
ccctctgacgtggtcagggacgtcctgagcgagctcggctaccaggactacgaggagcgc
cgtatatccctgggccctgagaccgcggaggtgagctactcgggcaagccagtggtcctg
agggccccgtccctgaggcctgagatctccattgatgttgtgccagccagggacggccct
gacaggcttgaggacatagcggcccacgcggaggagctcaccaggtgggccgactcgctc
ggggggccgtgggttggtatagtgttcgtgccgttcgtccagagtgactcaaggccctgg
cttaacgccgaggaggtggccaagttcctgggcaggaggctgggcgaggacatagccgtg
taccacggccagctgagcgactccgagaggaggcgggtcgaggaggagatagtaagctcc
tcccgcacgggcagggggccaaggatagtggtggccaccaaggccttcggcatgggtgtt
gacatacctaacataaggtggacccttcacgccgcgccgagcggcagcgtggaggacctg
taccaggagataggcagggccgggagggatgggaagcccgcgagggctgtcatactttac
aacccctctgacatgaccgtgcagtcggccatggccaagggggaggccataaggcccctc
agcgtgcacaggaccctgcagctgatagccgaggccatgcagtacgtcaagtacagggac
ggcgtcatcccgatccccatcaagggcagggagggcgagtgggggctcgtcaagtacctt
gacgtgctgagggtggcgggcctgatagactacgaggtcgtcagggggccgctgctggcc
tacgacctgccgagggagaaggtcgaggaggaggcggggtggtgcataccgatgagcgac
ggcacgtgcatatcaagggccgtgagggggctggagggccgcagggtctactttaacatc
tgcgacaacgacgcctcaatagggctgaaggcgcaggaggcctgtaagtcgataagctac
gacggcctcgtggccctggtctccgtgacctcgggctggaggaggccgaggaggtacctt
gaccctgagctctacgccatatcgctctggctctccctgagggagggcaggaaggtcaag
gagctctcggacctgctggaggcggcagtggcggccagggcaaggggagggcagcagctg
gctgactcccaggtcaagagggccatagaggagctcctcgccaggggggtcaggccccct
ctgggaggcgtcaggctgggcaaggtggtgaggtgtgacagcctggacgagtgcgtcgac
cgcgccataaaggacgttatagaggttgaggagctcgtgggggagggctcagtggttata
ggcgcctcccccacggccgcccccctggtctccgccaggtacctcaagctcactggcagg
tcgccctccgtttcgccaagttactacaggaggctggcctccctggccaggaggggggag
cttgagaaggctatgaacatgggctacgtcgttgtggtggccaaggacagcgaaaaagtt
aacgaggtcgttaagcttgtccacggctacccctacgccagcttctacctctacgccagg
tcaaaggcttag
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