Aliisedimentitalea scapharcae: QEZ52_00610
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Entry
QEZ52_00610 CDS
T10791
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
asca Aliisedimentitalea scapharcae
Pathway
asca03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asca00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QEZ52_00610 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asca03019
]
QEZ52_00610 (rnr)
03016 Transfer RNA biogenesis [BR:
asca03016
]
QEZ52_00610 (rnr)
Enzymes [BR:
asca01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
QEZ52_00610 (rnr)
Messenger RNA biogenesis [BR:
asca03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
QEZ52_00610 (rnr)
Transfer RNA biogenesis [BR:
asca03016
]
Prokaryotic type
tRNA degradation factors
QEZ52_00610 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
Motif
Other DBs
NCBI-ProteinID:
WZK89084
UniProt:
A0ABZ2XW68
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All DBs
Position
114284..116545
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AA seq
753 aa
AA seq
DB search
MTRIPSKQEVLDWISAHPTQNSKRDIARAFGIKGSDRIDLKRLLKELEAEGHLEKRRKTY
RDPERLPPVSILQVKAPDADGDLFARPLEWHGEGVEPVVLVMPRASDPALGEGDRILARL
TFVQESDHSYEARLIRRIGTNPKRILGVFRKGSEGGRIVPIEKSASPEWTVAEGAIGGAR
DGELVEAEQAGPKTRLGLPKARIINRLGDPSAPKAVSLIAIHQHGIPDSFPDAAIDEADK
AKPMGLGGRKDLRDMPLVTIDPSDARDHDDACFAQADDDPNNPGGHVVWVAIADVAAYVQ
NGTALDREARTRGNSSYFPDRVVPMLPDRLSGDLCSLHEGVPRPCVAVRMQLDSEGHKIS
HEFVRGLMKSVASLHYAEVQDAMDGAANERTEPLMDDVIRPLYAAYDALKAARAKRQPLE
LDLPERRIVLDDDGQVQSVNFRDRLDAHRLIEEFMILANVCAAETLIAKRSPLLFRVHEE
PAPEKLEALRETAQSAGLTLAKGQVLQTRHLNALLNQAAGTDEAELINISTLRSMTQAYY
SPENFGHFGLALQRYAHFTSPIRRYADLIVHRALISSHGWGDDGLAPDEIDRLEDTATHI
SETERRSMMAERDTTDRYLAAYLSERVGNEFTGRISGIARFGAFVKLDETGADGLVPVRT
LGREFFHFDAESGTLMGSDTGLLISIGQRVTVRITQATPVTGGLELELLTLDGQALPRGG
VRRSPAGQTARRKSVKAKRKKDKIARKVERKRR
NT seq
2262 nt
NT seq
+upstream
nt +downstream
nt
atgacgcgtatcccttccaagcaggaggtccttgattggatctcggcgcacccgacccag
aattcgaaacgagacattgcccgtgcctttggcatcaaggggtctgaccggatcgacctg
aaacggcttctcaaagagctcgaagccgaggggcatctggaaaagcgacgcaaaacctat
cgcgaccccgaacggctgccaccggtcagcatcctgcaagtcaaggcaccggatgcagat
ggcgacctgtttgcacgccccctggaatggcacggcgaaggtgtggaacctgttgtgctg
gtcatgccacgcgccagcgatccggcgttgggtgaaggtgatcgaattctggcccggctg
acgtttgtgcaggagagcgaccactcctacgaagccaggctgatccgacgcatcggtacc
aatccgaaacgcatcctgggcgtgttccgcaaggggtccgaaggcgggcgtattgtgccg
atcgaaaaatctgcgtctcccgaatggaccgtggctgaaggtgctattggcggtgcacgc
gatggtgagctggtcgaggcagaacaggccggaccaaaaacgcggctgggcctgcccaaa
gcgcggatcatcaaccgtctgggtgatccatccgcccccaaggccgtatcgctgatcgcc
attcatcaacatggcatacccgacagcttcccggacgccgccattgatgaggctgacaag
gccaagcccatgggcctgggcggacgcaaggatctgcgtgatatgccattggtcacaatt
gacccttcggatgcacgcgaccatgacgatgcctgtttcgcccaggccgatgacgacccg
aacaaccctggaggtcatgtcgtctgggtcgcgattgccgatgtggcagcctatgttcaa
aatggcacggcactggaccgcgaggcccgcacgcgcggcaactccagctatttccccgac
cgagttgtccctatgctacctgatcggttgtccggagatttgtgttctctgcacgaaggg
gtaccgcgcccttgtgtcgccgttcggatgcaattggacagcgaaggccacaagatcagc
catgaatttgtacggggcctgatgaaatcagtcgcttcgctgcattatgccgaagtgcag
gacgcgatggacggtgctgccaatgaacgcaccgaaccgttgatggatgatgtcatacga
ccgctctatgcggcctatgacgcgctgaaagcagcgcgagccaagcgccagcccctggaa
ctggacctgccagaacggcgcattgttttggatgacgatggtcaggtgcaatcggtcaac
ttccgcgaccggttggatgcccatcgcctgatcgaagaattcatgatcctcgccaacgtc
tgtgcggcagaaaccctgatcgccaaacggtcccccctgttgttccgtgtgcacgaagaa
cccgccccagaaaagctggaagcgctgcgcgagaccgcccagtctgccggcttgaccctc
gccaaggggcaggtgttgcaaacccggcacctgaacgccttgttgaaccaggcagccggt
acggacgaggccgagttgatcaatatctcgactcttcgctcgatgacacaggcctattac
agccctgaaaactttggtcatttcgggttggctttgcaaagatacgcccatttcacctcg
cccattcgccgttatgctgacctgatcgtgcatcgcgcactgatctcgtcgcatgggtgg
ggcgatgatgggctggccccggatgaaattgatcggctcgaagatacggccactcatatc
tcggaaaccgaacgtcggtcgatgatggctgaacgtgacaccaccgaccgatatctggcc
gcctatctcagcgagcgtgtcggaaatgagttcaccggtcgcattagcggcatcgcccgg
tttggtgcctttgtgaaactggacgaaaccggagcagatgggttggttccagtgcgcaca
ctggggcgcgaattcttccattttgatgccgaaagcggcacgttgatgggcagtgacacc
gggcttctcatctcgatcggacagcgtgtcaccgtgcgtatcactcaggctacgcctgtc
accggggggctggagctggagttgctgacgcttgacggtcaggccctgccccgaggaggt
gtgcgccgcagccccgcaggtcaaacggcaagacgcaaatccgtcaaggccaaacgaaag
aaggacaagatcgcccgcaaggttgaacgcaagcgccgctag
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