Aliisedimentitalea scapharcae: QEZ52_12025
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Entry
QEZ52_12025 CDS
T10791
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
asca Aliisedimentitalea scapharcae
Pathway
asca03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asca00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QEZ52_12025
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asca03019
]
QEZ52_12025
03009 Ribosome biogenesis [BR:
asca03009
]
QEZ52_12025
Enzymes [BR:
asca01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
QEZ52_12025
Messenger RNA biogenesis [BR:
asca03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
QEZ52_12025
Ribosome biogenesis [BR:
asca03009
]
Prokaryotic type
rRNA processing factors
QEZ52_12025
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
WZK87348
UniProt:
A0ABZ2XNB3
LinkDB
All DBs
Position
complement(2550959..2554144)
Genome browser
AA seq
1061 aa
AA seq
DB search
MAKKMLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFSEIHPDYYQIPVADREALMEEERAYAEALRARDDEEDKKPARSRSRSRT
KAEKVKSGDAVETKEVEPQISGMETIDLTEDADTDAETSTEVTEGSSPMERVSETPVEEP
QGAAAESTPDAADAEVEAADAQAVETPAEADAAVAETAPEGAQAAVETAFEGDIQEPADE
DDQDDDQPVQKRSDATSKDSSIESVADDDDSEDIRPPRKPRPRRYKIQEVIKVRQVLLVQ
VVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITNVTDRKKLKDIAAEIDVPS
GAGLIIRTAGAKRTKSEIKRDYEYLQRMWEQIRELTLKSIAPAKIYEEGDLIKRSIRDLY
NRDIDEVLVEGEAGYRIAKDFMKMIMPSHAKNVQKYEDPMPLFARFQVESYLAGMFNPTV
QLRSGGYIVIGVTEALVAIDVNSGRATKEGSIEETALKTNLEAAEEVARQLRLRDLAGLI
VIDFIDMDERKNNAAVEKRMKDKLKTDRARIQVGRISGFGLMEMSRQRLRPGMIEATTQP
CPACHGTGLIRSDDNMALSILRQIEEEGVRRRSREVLVRCPVNIANFLMNQKREHIAQIE
GRYGLSVRIEGDPHLVSPDFALEKFKTATRTVPVVTAPVVSVDTSLMEQIDAAENEKAAA
EPEVEAEAEAPAVETLGEDETKPKRKRRRRRRRSKSGSGSDTATDATDGSETTEAASDDA
STAPGDTSDGAKVENDDAPVTEASAENVKTEDAPVKPKRTRKPRISKAKKAEMDAAAEAE
AAASGAETVEAVAPDAGADEPEAKPKSTRTRRKPTKSRAKVVKDEEQPESVEGSATAAPE
EATPVAVAEDPVVDAASDTAIEPNKSEPVEPETEGAAPEQETAQDTGLVQDTAQPVVVNG
ADAQADDPVEVAESQPTADPQDPVVEVETAGGSDTVDEAQAETPVAVEHPVIETEIVVAE
TPVEPQPESQTAAEPDPEPAPAPEAEVPSRPKRRGWWSLGS
NT seq
3186 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagaaaatgcttatcgatgccacccacgcggaagaaacccgcgtcgtggtggtc
gacggaaacaaggtcgaggaatttgattttgaatccgaaaacaaacgtcaacttgcaggc
aacatctatcttgcaaaagtaacacgggttgaaccgtcgcttcaggcggcatttgtggat
tacggcggaaaccgacacgggttcttggcgttttccgaaatccatcctgactattatcag
atcccggtcgctgaccgagaagcgttgatggaagaagaacgcgcatatgccgaggcactg
cgcgctcgtgacgacgaagaagacaagaaaccggctcgctcacgttcgcgcagccggacc
aaggcggaaaaggtgaaatccggcgatgcggttgagaccaaagaggtcgaaccgcagatt
tctggtatggaaaccatagacctgaccgaggacgctgataccgatgccgaaacatcgaca
gaggtgaccgaagggtcgtctccgatggagcgggtttcggaaacgccggttgaggaaccc
cagggcgcagctgccgagtcaactccggatgccgcagatgctgaggtcgaggctgcggat
gcacaggcggttgagacgccggctgaggcagacgctgccgtggccgaaaccgcgccagaa
ggcgcgcaggcggctgtcgagaccgcttttgaaggcgacattcaggaacctgcggatgaa
gatgaccaggatgacgaccaacctgttcagaaacgctctgatgcgacatccaaggattcg
agcattgaatccgtagccgatgatgacgacagcgaagacattcggcccccgcgcaaaccg
cgcccacgccgttacaagattcaagaagtcatcaaggtccgtcaggtcctgttggttcaa
gttgtcaaggaagagcgcggcaacaagggcgctgcgctgacgacctatctgtctctggca
ggtcggtattgtgtgctgatgccgaacacggcccgtggcggtggtatctcgcgcaagatc
accaatgtaaccgatcgcaagaagctgaaagacatcgctgccgaaatcgacgtgccgtcc
ggcgcgggtctgatcattcggaccgctggtgccaaacgcaccaaatccgagatcaaacgc
gactatgaatacctgcaacgcatgtgggagcagatccgcgagctgacgctgaaatccatc
gcgccagccaagatctacgaagaaggcgacctgatcaaacggtcgatccgcgatctctat
aatcgcgacatcgacgaagttctggttgaaggcgaagcagggtatcgcatcgccaaggac
ttcatgaagatgatcatgccgtcccacgccaagaacgtgcagaaatacgaagatccgatg
ccgttgtttgcgcggttccaggtggaaagctatctggccgggatgttcaatccgacagta
cagttgcggtccggcggctatatcgtgatcggtgtgaccgaagccctggtggcgattgac
gtcaactcggggcgcgcgaccaaggaagggtcgatcgaggaaaccgcgctcaagaccaac
ctggaggccgccgaagaggtggcccgccagttgcgtctgcgtgaccttgccggtctgatc
gtcattgatttcatcgacatggacgaacgcaagaacaacgcggccgtcgaaaaacggatg
aaagacaagctcaagaccgaccgtgcccgcatccaagtgggtcggatcagcggttttggc
ctgatggagatgagccgtcagcgtctgcgtcccggcatgatcgaagccacgactcagccg
tgcccggcctgtcatggcaccggtctgatccggtcggatgacaatatggcattgtcgatc
ctgcgccagatcgaagaggaaggcgtgcgccgtcgctcgcgcgaggttctggtccgttgt
ccggtgaacatcgccaacttcctgatgaaccagaagcgcgaacatatcgcccagatcgaa
ggccggtatggtctgtcggttcggatcgaaggtgacccgcatctggtgagcccggacttt
gcgcttgaaaaattcaagaccgcgacccggacggttcctgttgtaacagcgcctgttgtc
tctgtggacacctcgctgatggagcagattgatgctgccgaaaacgagaaagcagcggcc
gagccggaggttgaagcggaggcagaagcgcccgcagtggaaactttgggagaggatgaa
accaaacccaaacgcaagcggcgccgtcggcgtcgtcggtccaaatctggcagtggctct
gataccgcgactgatgccacagacgggtcagaaacaaccgaggccgcgtcggatgatgca
tccacggcaccgggcgacacgtctgatggcgccaaggtggaaaacgatgatgcgcctgtg
accgaggcaagcgcagaaaacgtcaaaaccgaagacgcgccggtcaagcccaagcgtacc
cgcaagccgcgtatcagcaaggccaagaaagccgagatggacgccgcagccgaagccgaa
gccgcagccagtggcgcggagacggttgaagcggttgcgcctgatgccggagcggacgag
ccagaggccaaacccaagtcgacgcggacacgccgcaagccgaccaaatcccgtgccaag
gtggtaaaggatgaggaacagcccgagagcgttgaaggaagtgccactgctgcacccgag
gaggcgacccctgtggccgtggccgaggaccctgtggttgatgccgcttcggacaccgcg
atcgagccgaacaagtcagagcctgttgaacctgaaacagagggtgcagcacctgagcag
gagaccgcacaggatacagggttggtgcaagacactgcacagccggttgtggtgaacggt
gccgatgcgcaggctgatgaccctgttgaggtcgccgaaagtcaaccgacggctgatcca
caagaccctgtcgtggaagtcgaaacggctggtggttccgataccgtggatgaggcacag
gccgaaacgcctgtggctgtcgaacacccggtgatcgagaccgaaatcgtggttgccgaa
accccggtcgagcctcagcccgagtcacagactgctgcagagccggatccggaacctgca
ccggccccggaggcagaggtcccatcacggcccaagcggcgcggatggtggtcgctgggc
agctaa
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