Hoyosella subflava: AS9A_0431
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Entry
AS9A_0431 CDS
T01514
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
asd
Hoyosella subflava
Pathway
asd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
asd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AS9A_0431 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
asd03021
]
AS9A_0431 (rpoC)
03400 DNA repair and recombination proteins [BR:
asd03400
]
AS9A_0431 (rpoC)
Enzymes [BR:
asd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AS9A_0431 (rpoC)
Transcription machinery [BR:
asd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AS9A_0431 (rpoC)
DNA repair and recombination proteins [BR:
asd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AS9A_0431 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AEF38888
UniProt:
F6EHU0
LinkDB
All DBs
Position
437516..441469
Genome browser
AA seq
1317 aa
AA seq
DB search
MLDVNFFDELRISLATAEDIRAWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIALAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITHVDNELRHNELSTLEAQMNVEKKGVADQRDADLEARAQKLETD
LALLETEGAKADALDKVKKGAEREMRQIRDRAQREIDRLEEIWNVFTKLAPKQLVLDELI
YRELVDRYGEYFEGGMGAEAIQKLLEIFDVHAEAEILRETIRSGKGQKKLRALKRLKVVA
AFQHTGNSPLGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
TQVWEVLEEVITEHPVMLNRAPTLHRLGIQAFEPILVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARVLMLSSNNILSPASGRPLAMPRLDMVTGLYHLTRKVDGAKGEYQ
PANGDSPERGVYATPAEAIMAFDRGELALQARIKVRITNRRPTREQENELFPEGWKPGDA
WLADSTLGRVHFNDLLPADYAFVNDVMPKKRQSVIINDLAERYPMIVVAQTVDKLKDSGF
YWATRSGVTVAMSDVLVPPEKQQILAEYEDKAEKLEKKYQRGQVSTDERRDGLVEIWKEA
TEKVGKALEDHYPDDNPIPMIVKSGAAGNMTQIRSLAGMKGLVTNPKGEFIPRPIKSSFR
EGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRETDCGTSRGLEMPI
AEIGFDGQLHPVEHVETSVYARTLASDAIDKDGNVVVERGHDLGDPAIEKLIDAGITGVK
VRSVLTCTTATGVCATCYGRSMATGQLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGVG
EDITGGLPRVQELFEARVPKNKAPIAEVSGRVRIDDDDRFYKVIIVPDDGSDEVTIDKLP
KRQGLARFKHDDGVERILAENDHVEVGQELLEGSADPHEVLRVRGPREVQIHLVNEVQKV
YRSQGVSIHDKHIEVIIRQMLRRVTIIDSGSTEFLPGSLVERADFEAENRRVVAEGGEPA
AGRAVLMGITKASLATDSWLSAASFQETTRVLTDAAINRRSDRLIGLKENVIIGKLIPAG
TGINQYRNIQVQPTEEAREAAYSVASYEDQYYGPDTFGMSTGAAVPLDDFGGYTDYR
NT seq
3954 nt
NT seq
+upstream
nt +downstream
nt
gtgctagacgtcaacttcttcgatgaactccgcatcagtctcgccactgcggaggacatc
cgggcctggtcgcacggcgaggtcaagaagccggagacgatcaactaccgcaccctcaag
cccgagaaagacggtcttttctgcgagaagatcttcggcccaactcgtgactgggaatgc
tactgcggtaagtacaagcgtgtccgcttcaaaggcatcatctgcgagcgatgcggtgtc
gaggtcactcgcgccaaggttcgtcgtgaacgcatggggcacatcgctctcgccgcgcca
gtaacccatatctggtacttcaagggcgtgccgagtcgactcggctacctgcttgacctc
gcgccgaaggatctggaaaagatcatctacttcgccgcttacgtgatcacgcatgtcgat
aacgaactgcgtcacaacgagctgtcgactctcgaagcgcaaatgaacgtcgagaaaaag
ggtgtcgccgatcagcgcgatgctgacctcgaggcgcgtgcccagaagctcgaaaccgac
ctcgcactcctcgagaccgagggcgcgaaggcggatgcgcttgacaaggtcaagaagggc
gccgagcgcgagatgcgtcagattcgcgatcgcgcgcagcgggagatcgatcgtctcgaa
gagatctggaacgtcttcaccaagctcgcccccaagcagcttgtgcttgatgaactgatc
taccgtgagctcgtcgaccgctacggcgaatacttcgaaggcggcatgggtgctgaggcg
atccagaagctcctcgagatcttcgacgtgcacgccgaagcggaaatcctccgcgaaacc
atccgcagtggcaaaggccagaagaagcttcgcgcactgaagcgtctcaaggtcgttgca
gcgttccagcacaccgggaactcgccgctgggcatggtgcttgatgctgtgccagtgatt
ccgccggaactgcgcccgatggtgcagctcgatggtggccgcttcgcgacgtccgacctg
aacgacctgtaccgccgcgtcatcaaccgcaacaaccgcctgaagcgcctcatcgatctc
ggagctcccgagatcatcgtgaacaacgagaagcgcatgctgcaggagtctgttgacgcg
ctgttcgacaacggccgtcgtggccgccctgtgaccggcccgggcaaccgtccgctgaag
tcgctgtctgatctgctcaagggcaagcagggccgcttccgtcagaaccttctcggtaag
cgtgtcgactactcaggccgttcggtcatcgttgttggtccgcagctcaagctgcaccag
tgcggtctgccgaagctgatggcgctcgaactgttcaagccgttcgtcatgaagcgtctc
gtcgacctcaaccacgcgcagaacatcaagtctgcgaagcgcatggtggaacgtcagcgc
acacaggtgtgggaggtcctcgaagaggtcatcaccgagcacccagtgatgctcaaccgc
gcacccacgctgcaccgcctgggaatccaggccttcgagccgatcctcgtcgagggtaag
gcgatccagctgcacccgctcgtctgtgaggcgttcaacgctgacttcgacggtgaccag
atggctgtgcacttgccgctgtcggccgaggctcaggcagaggcacgtgtgctgatgctg
tcgtcgaacaacatcctgtcgccggcatcggggcgtccgctcgcgatgccgcgtctagac
atggtgaccggcctctaccacctgacccgcaaggtcgacggtgccaagggtgaataccag
ccggccaacggtgacagccctgagcgtggtgtgtatgcgacaccggcagaagccatcatg
gcgttcgatcgtggcgagctggcactgcaggcgcggatcaaggtgcgtatcacgaaccgt
cgccctactcgcgaacaagagaacgaattgttcccggagggctggaagcccggcgacgca
tggcttgctgattcgaccctgggtcgcgtgcatttcaacgacctgctgcccgcggactat
gcattcgtcaacgacgtgatgccgaagaagcgccagtcggtcatcatcaacgatctcgcc
gagcgatacccgatgatcgtcgtcgcgcagacagtggacaagctcaaggattcaggcttc
tactgggccacccggtccggtgtgacagtcgccatgtccgacgtgctggttccgccggag
aagcagcagattctcgcggaatacgaagacaaggccgaaaagctggagaagaagtaccag
cgtggccaggtctcgactgacgagcgtcgtgacggtctggtggaaatctggaaggaagcg
acagagaaggtcggtaaggccctcgaagatcactatccagatgacaacccgatcccgatg
atcgtgaagtcgggtgctgcgggcaacatgacccagattcgctcgctcgcgggcatgaag
ggtctggtgaccaacccgaagggtgagttcatcccgcgtccgatcaagtcctccttccgt
gagggcctgaccgtgctcgagtacttcatcaacacgcacggcgcgcgtaaaggtctggct
gacaccgcccttcgtaccgccgactcgggttacctcacccgtcgtctcgtcgatgtttcg
caggacgtcatcgtccgcgaaacggactgtggaacttctcgcggtctcgagatgccgatc
gccgagattggcttcgatgggcaactgcaccctgttgagcacgtcgagacgagtgtttac
gcccggaccctggcgtcggatgcgatcgataaggacggcaacgtcgttgtcgagcgtggc
cacgacctcggtgaccctgcgatcgagaagctgatcgacgcaggaatcacgggtgtgaag
gtccgctcggtgctgacctgcaccaccgcgacgggcgtgtgtgcgacttgctacggtcgc
tcgatggcgaccggtcagctcgtcgatatcggtgaagctgtcggtatcgtcgccgcccag
tcgatcggtgagcctggtacgcagctgacaatgcgtacgttccaccagggcggtgtcggt
gaagacatcaccggcggtctcccacgtgtccaggaactgttcgaagcgcgtgtgccgaag
aacaaggcgcccatcgctgaggtttcgggtcgtgtccgtatcgacgacgatgaccgcttc
tacaaggtcatcatcgttccggatgacggcagtgacgaagtcaccatcgacaagctgccg
aagcgtcagggccttgcccgcttcaagcatgacgatggcgttgagcgaatcctggccgag
aacgaccacgtcgaggtgggacaggagcttctcgaaggctccgcggatccgcacgaagtg
ctgcgtgttcgcggcccgcgtgaggttcagatccacctcgtaaacgaggtccagaaggtc
taccgttcacagggtgtgtcgatccacgacaagcacatcgaagtgatcattcgccagatg
ctgcgtcgcgtgacgatcatcgattcgggctccaccgagttcctgcccggctcgctcgtt
gagcgcgccgacttcgaggcggaaaaccgtcgcgtcgtcgcggagggtggcgagcccgca
gcaggtcgtgcagtgctcatgggtatcaccaaggcatcgctcgcgaccgattcgtggctg
tccgcggcctccttccaggagaccactcgagtgctcaccgatgcggccatcaaccgccgc
agcgaccgactcatcggtctcaaggagaacgtgatcatcggtaagctgatcccggccggt
accggcatcaaccagtaccggaacatccaggttcagccgaccgaagaggcccgcgaggcc
gcatactctgtcgcttcgtacgaggaccagtactacggtcccgacacgttcggcatgagc
accggtgccgcagttccgctcgacgacttcggtgggtacaccgactaccggtag
DBGET
integrated database retrieval system
