Hoyosella subflava: AS9A_3268
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Entry
AS9A_3268 CDS
T01514
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
asd
Hoyosella subflava
Pathway
asd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
asd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AS9A_3268
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
asd03021
]
AS9A_3268
03019 Messenger RNA biogenesis [BR:
asd03019
]
AS9A_3268
Transcription machinery [BR:
asd03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
AS9A_3268
Messenger RNA biogenesis [BR:
asd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AS9A_3268
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
Spore_III_AA
AAA_25
NACHT
Motif
Other DBs
NCBI-ProteinID:
AEF41712
UniProt:
F6EP52
LinkDB
All DBs
Position
complement(3348737..3350836)
Genome browser
AA seq
699 aa
AA seq
DB search
MVDVRQLGAQIRRWAARQSPNSAIRESGKERISVTETDVMTSPDAEAAVAAATKRAQARK
SAGLAGMVLTELRALAGSLGIRGTSGMRKSELIAAIQERQRAASSESADKPEPKPADATE
KPAEDAEASAPAPARGRRRASRQATDTGADGANKAAEPAAQAQAPAAKQPTESTAAAAPS
APADQPAPDADSEAEGPRRRQRRGGTRKAAGETEAAQAPKEDDAPRETRERGRPAPAREA
QGSKDVGESGERGDDRRRSQETEQETRSGGDGQRSGPRDQSDDDESGRGRRGRRFRERRR
NRDRGGSDTTDTDVREDDVLQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNMVRKNGL
RRGDAITGAVRVPKEGEQTNQRQKFNPLVRLDTINGMAPEQARKRPDFGKLTPLYPNERL
RLETTPNVLTTRVIDLIMPIGKGQRALIVSPPKAGKTTILQDVSNAIAVNNPECYLMVVL
VDERPEEVTDMQRSVRGEVISSTFDRPPSDHTSVAELAIERAKRLVEIGKDVVVLLDSIT
RLGRAYNNSSPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMVETGSQGD
TVIFEEFKGTGNAELKLDRRIAERRVFPAVDVIPSGTRRDDLLLNPDEFAVLHKLRRVLS
GLDSHQAIDLLIDRLKKSKNNLEFLMQVAKTAPGAMGED
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atggtagacgtgcggcaactcggagcccagatcagacgctgggctgcgagacaatccccc
aattcggcgatacgcgaatcggggaaggaaaggatctccgtgacggaaacggatgtgatg
acgagtccagacgctgaggctgctgttgctgctgccacgaagcgtgcacaagcccgaaag
agtgccggcctcgcaggcatggtgcttacagaattgcgtgctctcgcaggaagcctcggg
attcgcggcacgtcaggcatgcgtaagagcgaactgatcgcggcgattcaggaacgccag
cgcgctgctagctcagaaagcgctgacaagcctgaaccaaagccagcggacgcaaccgaa
aaacctgctgaggacgctgaagcgagcgctccggctcctgcacggggtcgtcggcgcgcc
tccaggcaggccactgacactggcgcggacggggcgaacaaggccgcggagccagcagca
caggcacaggcaccagcagcgaaacagccgaccgaatcgacagcggccgccgctccaagc
gcgcccgctgaccagccggctccagacgctgactcagaagccgaaggcccgcgccgacgt
cagcgacgaggtggcactcgcaaagccgctggtgagacggaagcggcacaggcgccaaaa
gaggacgacgcacctcgcgaaacgcgtgaacgcggacgcccagcccccgcgcgagaggca
cagggctcgaaggacgtcggcgaatccggcgaacgcggtgacgatcggcgcaggtcgcag
gaaaccgagcaggagacgcgttcgggcggcgacgggcagcggtctgggccacgcgatcag
tcggatgatgacgagtcgggccgagggcgtcgcggccgcaggttccgggagcgtcggcgc
aaccgtgatcgcggtggcagcgataccacggacaccgacgtccgtgaggatgatgttttg
cagcctgttgcgggcatcctcgatgtcctcgacaactacgctttcgttcggacctccgga
tatctcgccggtccgaacgatgtttacgtgtcgatgaacatggtccgcaagaatggttta
cgtcgcggcgacgcaattactggtgcggtgcgtgtgccgaaagaaggcgagcagaccaat
cagcgacagaagttcaacccgctggttcgtctcgacacaattaacggtatggcgcccgag
caggcgcgcaaacgaccggacttcgggaagctcacaccgctctatccgaatgagcggttg
cgtctggagaccactccgaatgtgctcaccacgcgggtgatcgacctgatcatgccgatc
ggtaaggggcagcgcgctctgatcgtcagtccgcccaaggccggtaagacgacgattctg
caggatgtttccaacgcaattgcagtgaacaatcccgagtgctacctgatggtggttctt
gttgacgagcgacctgaagaagtcacggacatgcagcgatccgtccgtggcgaggtcatc
tcgtcgacgtttgaccgtccgccatcagaccacacatcggtcgctgagcttgcgattgaa
cgcgcaaagcgactcgtcgagattggcaaggacgtcgttgtactccttgactcgatcact
cgcctaggccgcgcgtacaacaactcttccccggcatccgggcgcatcctgtccggcggt
gtcgattcgacggcgctttatccgcccaagaggttccttggcgctgcccggaacatcgag
gaaggcgggtctctgacaatcatcgccacggcgatggtggaaacgggctcacagggcgat
acggtcatcttcgaagaattcaagggcaccggcaacgctgagctcaaactcgatcggcgg
attgctgagcggcgcgtcttccccgcggtcgacgtcattccgtcgggtacccgacgagat
gatctgctgttgaaccccgatgagttcgctgtgctgcacaaactgcggcgggtgctctcc
gggctcgactcccaccaggcgattgatctgctcatcgaccggttgaagaagtcgaagaac
aacctcgaattcctgatgcaggtcgcaaagacggcgccgggcgcaatgggcgaggactaa
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