Hoyosella subflava: AS9A_3478
Help
Entry
AS9A_3478 CDS
T01514
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
asd
Hoyosella subflava
Pathway
asd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
asd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AS9A_3478
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
asd03400
]
AS9A_3478
Enzymes [BR:
asd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AS9A_3478
DNA repair and recombination proteins [BR:
asd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AS9A_3478
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
RecG_dom3_C
AAA_22
DUF7525
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
AEF41919
UniProt:
F6EQP2
LinkDB
All DBs
Position
complement(3547963..3551568)
Genome browser
AA seq
1201 aa
AA seq
DB search
MSAQQSRQGASSALFDFALGDAALQQVRDAVGRTERTLVAPLGARPFIAAALASVAPVLL
VTANRREAEDLTSELQGVLGDTVALFPSWETLPHERLSPGADTVGQRLQVLRRLARPDDA
TFGAPLKVIVAPVRAVIQPMSRGLGERAPIVLRIGEERGFDDLLAELTEFAYKRVDMVAK
RGEYAVRGGILDIFPPTAEHPIRIEFWGDEVTELREFSVADQRSLSGGAVEVVIAPPCRE
LLLTDSARERAAALAAAHAGNDSLVELFDKLSSGIPVEGMEALIPALTEGPLELLPELLP
QGTVVVICDPEKTNARADDLRSSGTEFLEASWAAASFGGGVPIDSRTLDLSASAFKPLPF
VRERAVAVGRGWWDLTQLASGSDDELVLPVQAAPAMRGSEQEIATTFAMLRAHISQGGRA
AIVVPGAGTAQRYKERLLDAEVPAALLEPGKPLSEGVVNLLCATLSSGVVFEDAQLIVLT
ESDLTGNRATTTPTRKLASKRRNQVDPLALQAGDLVVHDQHGIGRFVEMAERTVSGARRE
YLVIEYAASKRGHPGDRLFVPMESLDQLSRYVGGEAPGLSKMGGSDWQNTKRKARKAVRE
IAAELVQLYAKRQASPGHAFGPDSPWQSELEDAFAFVETDDQLTAISEVKGDMERGVPMD
RVVCGDVGFGKTEIAVRAAFKAVQDNKQVAVLVPTTLLAQQHTETFTQRMAGFPVKIKQL
SRFTGPTDSRAVIAGLADGTVDVVIGTHRLLQTGVRWKDLGLVIVDEEQRFGVEHKEHIK
ALRSHVDMLTMSATPIPRTLEMSLAGIREMSTILTPPEERLPVLTYVGAYEDKQVGAAIR
RELLRDGQVFYVHNRVSSIEKAAKHIRDLVPEARVVVAHGQMNEEALETTVQGFWNREFD
VLVCTTIVETGLDISNANTLIVERADTLGLSQLHQLRGRVGRGRERGYAYFLYPSNRVLT
ETAYDRLATISQNSDLGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGFDLYIRLVGEAV
EAFKAVADGRPVEAPEEKKEVKIDLPVDAHIPPDYVSSDRLRLEAYRKIAAAQGDDELDA
ATEELLDRYGPLPEEVKRLLSVARLRLMCRERGLTDVAVVGTQLRLTPMTLPDSKQVRLK
RLYPSAQYRPTTSQIQLPLPRSGRGTPADPRVRDNDVVQFVADFLTSLDGLPKGETQVIV
R
NT seq
3606 nt
NT seq
+upstream
nt +downstream
nt
gtgtccgctcagcagtcacggcaaggtgcgtcctcggcgctcttcgatttcgcgctcggc
gatgcggcattgcagcaggtgcgtgacgcagtcggccgaaccgagcgcacgcttgtcgca
cccctgggggcgcgtcctttcatcgcggccgcgctggccagcgtcgccccggtgctgctt
gtcacggccaatcgccgcgaggctgaagatctgacgagtgagcttcaaggcgtcctcggt
gacactgtcgcattgtttccctcatgggagacgctgccgcacgagcggctgtcccccgga
gcggataccgtcggtcagcggcttcaggtgctgcggcggcttgctcgtccggacgatgcc
acgttcggggcgccgctcaaggtgatcgtcgcgccggtgcgtgcggttattcagccgatg
tcacgcgggctcggtgagcgcgcaccgattgtgctgagaatcggcgaggagcgcggcttc
gacgatttactcgctgaactcaccgagttcgcctacaagcgcgttgacatggtcgctaag
cgcggcgagtacgcggtgcggggcgggatcctggacatcttcccacccactgctgaacac
ccaatacgcatcgagttctggggcgatgaggtcacggaactgcgcgagttctccgttgcc
gaccaacggtcactttccgggggtgcggtcgaggttgtcatcgcgccgccgtgccgggaa
ctcttgctgaccgactctgcgcgggaacgcgccgccgcacttgccgcggcccacgcgggc
aacgactcgttggtggaactgttcgacaagctgtcctcgggaattccagttgagggcatg
gaggcgctgatccctgctttgacggaaggtccgcttgagctgctgcctgagcttcttccg
caggggaccgtcgtcgtaatctgcgatccggagaaaactaacgctagggcggacgacctc
cgcagttccggcacagagttcctcgaggcttcctgggctgccgcttccttcggcgggggt
gtccccatcgactcacgcacgctcgacctttcggcatcagccttcaaaccgctgcccttt
gtacgtgaaagggctgtagctgttggacgaggctggtgggatctcacgcagctcgcgagc
ggaagcgacgacgaactggtcttgccggtccaggctgcgccagcgatgcggggaagtgag
caggagatcgcgaccactttcgccatgctccgcgcgcatatctcgcagggcggccgtgcc
gcgatcgtcgtccccggtgctggtaccgcgcagcggtataaggagcggctacttgacgcg
gaagtgcccgcagctcttctcgagccgggcaagcccctgtccgaaggcgtggtgaacctg
ctgtgcgcaacgctcagcagcggtgtggtgttcgaggacgctcagctcatcgtgctcacc
gaatcggatctgacgggaaaccgggcgaccacgacgcccacgcgcaagcttgcatcgaag
cggcgcaaccaggttgatccgcttgccttgcaggcgggtgaccttgttgtgcacgatcag
cacggcatcggacggttcgtggagatggcggaacggacagtcagtggcgcgcggcgcgag
tacctcgtcatcgaatacgcggcgagcaagcgcgggcacccgggggacaggctgttcgtt
ccgatggagtctctggaccagttgtcgcgctatgtcggcggtgaagcgccaggtctgtcg
aaaatgggcggctccgactggcagaacactaaacgtaaggcacgcaaagcggttcgtgag
atcgcggcagagcttgtgcagttgtatgcgaagcggcaggcgtctccgggccatgcattc
ggcccagattcgccgtggcaaagcgagctcgaagatgctttcgccttcgtggagacggac
gatcagctcaccgcgatttcagaagtcaagggcgatatggaacgtggcgtcccaatggac
agggttgtctgcggcgacgtcggcttcggtaagaccgagatagccgtacgggcggccttc
aaagccgttcaggacaacaagcaagttgcagttctggtgccgacgacgttgctcgcgcag
cagcacacagagacgttcacgcagcggatggcgggattccctgtaaagatcaaacagttg
tcgcgcttcaccggtcccacggactcacgtgcggtcatcgctgggcttgcggatgggacg
gtagacgtcgtcattggcactcacaggctgctccagacaggtgtgcgctggaaagacctc
ggactggtgattgtcgatgaggagcaacggttcggtgtcgaacataaggagcacatcaaa
gcgcttcgttcgcacgtcgacatgctgacgatgtccgcgacccccataccgcgaacgctg
gaaatgtccctggcaggaatcagggaaatgtcgacgatcctgacacctcctgaggagcgg
ctgcccgtcctcacatacgtcggggcgtacgaagacaaacaggttggtgcagcaatccgg
cgggaactccttcgcgacggccaggtgttctacgttcacaaccgcgtcagctcgatcgag
aaggcagccaaacacattcgcgatctcgtgccggaggctcgtgtcgtcgtcgctcacggt
cagatgaacgaagaagcgctcgagacaactgttcagggcttctggaaccgcgaattcgac
gtgctggtgtgcaccacaattgtggagactgggctcgatatctcaaacgcgaacacgctg
atcgtggagcgcgcggacacgctcggtctctcgcaactgcatcagttgcgcggccgcgtg
ggtcgcggcagggaacgcggctatgcctacttcttgtatccctcgaaccgggtcctgacc
gagacggcgtacgacaggctagcgacgatctcgcagaactccgatcttggtgcggggatg
gcggtagcgatgaaggacctcgagatccgtggtgcaggaaacgttctcggagccgagcag
tccggccacgtcgcgggggtcgggttcgatctctacattcgactcgtgggcgaggctgtc
gaagcattcaaggcagtggccgatggcagaccggttgaggcacccgaggagaagaaagaa
gtcaagatcgaccttccagtcgatgctcacataccgcccgattacgtctccagtgatcgc
cttcggctcgaggcttatcgcaagatcgcagccgcgcagggcgacgacgaactcgatgcc
gccacagaagaattactcgacaggtatggcccgctgccagaagaggtcaaacgactgctg
tccgtggccaggttgcgcctgatgtgccgcgaacgcggactcacggatgtcgcggtggtg
ggcacacaactgagactgacgccgatgacgcttccggattcgaaacaggtcaggctcaaa
agactgtacccatcggcccagtaccgccccacgacgtcgcaaatacagcttccgctgcct
cgcagcggcaggggaactccagctgacccccgggtgcgtgacaacgacgtcgtccagttt
gtagcggacttcctgacctcgctggatgggcttccaaaaggcgagacgcaggtgatcgtg
aggtga
DBGET
integrated database retrieval system
