Actinoplanes sp. SE50/110: ACPL_1374
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Entry
ACPL_1374 CDS
T02044
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ase
Actinoplanes sp. SE50/110
Pathway
ase03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ase00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACPL_1374
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ase03019
]
ACPL_1374
03009 Ribosome biogenesis [BR:
ase03009
]
ACPL_1374
Enzymes [BR:
ase01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
ACPL_1374
Messenger RNA biogenesis [BR:
ase03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ACPL_1374
Ribosome biogenesis [BR:
ase03009
]
Prokaryotic type
rRNA processing factors
ACPL_1374
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DnaJ_CXXCXGXG
DUF5351
Pep1_7
Motif
Other DBs
NCBI-ProteinID:
AEV82271
UniProt:
G8S3B1
LinkDB
All DBs
Position
1434409..1437630
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AA seq
1073 aa
AA seq
DB search
MLDNEPPVTLGEQGGERDGAATPPVDAATGTTPARRTRAPRRKAAAPGAEEVAETAAAAP
AEVVEPTPAPVKKATRSRRKVAEPAPEAAPAAAAEEAAAEAVAETAEKPAPVKKATRSRR
KVAAPPAEQLEIPPAAEPSPAPVAPVAPPESPEVPIVGILPLDDDFLEPAEEEPAEEQPA
EEQAAAEAEPAGQRPARARKAPLPPPVLFMPPEATEVAPAPVSRRRRPVTDPLAPVATAP
AEQPAEPAAAEPVTAEPVTAEAAEEPAEGTRRSRRRRRGAAEEPAPEPVAAAAEQPVLDE
IDESDESADDAEDGVEDDGDDDEAGGRRRRRRGRRGRGRGKGPSDEADDADLDAEESEGE
AEAAHDEEAEDEESEDGEGGVTRRRRRRRRKGSSGDGETGGIEDGVHTVVRVREPRRSDE
VQGVSGSTRLEAKRQRRRDGREQRRTRPPILSESEFLARREAVDRVMVVRQKPDRIQIAV
LEDGVLVEHYVARATSGTMVGNVYLGKVQNVLPSMEAAFVDVGRGRNAVLYAGEVNWDAT
GLEGRARSIEQALRSGDSVLVQVTKDPIGHKGARLTSHIALSGRHLVYVPNGNASGISRK
LPDNERKRLRDILKKLVPDGAGVIVRTAAEGASEDELARDVKRLQAQWEDIQARAAEGNA
PRALSEEPDLVIRVVRDLFNEDFRELIVQGEQAYAEVENYLHSVSPDLVERLHRHVGVGD
VFAENRIDEQILKGLDRKVFLPSGGHLVIDRTEAMTVVDVNTGKYTGAGGNLEETVTRNN
LEAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRELVLRRLTECLGRDRTKHQVTEITSLG
LVQMTRKRIGAGLLEAFSETCDHCKGRGVIIHHEPVPERRSNGGGAAPAATQVKAVAAAA
RTEAPPAQPAAATSGRSRRRRGGGDTPPVEVAEVVEPITEQAGPITEEAGPAAEVAELPA
IPEVPGTPVAPVAAAAPVAGSGVIRSGVVRPAQPVVTSSADADDYDISGYDLSRYETEEA
DGAAYEADTEPLRLVGSDDPDAADEDEDDDESVGVGTGRRRSRRSGARRRTRP
NT seq
3222 nt
NT seq
+upstream
nt +downstream
nt
atgctcgataacgagcccccagtcaccttgggagaacagggcggtgaacgggacggggca
gcgactcctcccgtagacgccgccaccggcaccaccccggcccgccggacgcgtgcaccg
cgtcgcaaggcggccgcgcctggagctgaggaggtcgcggagactgccgcggccgccccg
gccgaggtggtggagccgactcccgcaccggtgaaaaaggccacacggagccgccgcaag
gtggccgagcctgccccggaggcggctccggccgctgcggcggaggaggcggcggcggag
gccgtggccgagaccgccgagaagccggctccggtgaagaaggccacgcgcagccgccgc
aaggtcgccgcgcccccggccgagcagctggagatcccgccggccgccgagccgtcgccc
gctcccgtggcgccggtggcgccgccggagagccccgaggtgccgatcgtcgggatcctc
ccgctcgacgacgacttcctggagcccgccgaagaggagcccgccgaagagcagcccgcg
gaagagcaggccgccgcggaggcggagcccgccgggcagcgcccggcccgggcccgcaag
gccccgctgccgccgccggtgctgttcatgccgccggaggcgaccgaggtcgcgccggcg
ccggtcagccggcgccgccgcccggtcaccgacccgctcgccccggtggcgaccgcaccg
gccgagcagcccgccgagccggccgctgccgagccggtcaccgccgagccggtcaccgcg
gaggccgccgaggagcccgccgagggcacccggcgcagccgtcgccggcgtcgtggcgcg
gccgaggagccggcccccgagccggtggccgccgcggccgagcagccggtgctggacgag
atcgacgagagtgacgagtccgctgacgacgccgaggacggtgtcgaggacgacggggac
gacgacgaggccggtggccgccgtcgtcgccgccggggccgtcgtggccgcggccggggc
aagggcccgtccgacgaggccgacgacgccgacctggacgccgaggagtccgagggcgag
gccgaggccgcgcacgacgaggaggccgaggacgaggagtccgaggacggcgagggcggg
gtcacccgacgtcgccggcgtcgtcggcgcaagggttcgagcggggacggcgagaccggt
ggcatcgaggacggtgtgcacaccgtggtgcgggtccgtgagccgcgccgttccgacgag
gtgcagggcgtctccggctcgacccggctggaggccaagcgtcagcgccgccgggacggc
cgcgagcagcgccgtacccgtccgccgatcctgagcgagtcggagttcctggcccgccgc
gaggcggtggaccgggtgatggtcgtccggcagaagccggaccgcatccagatcgccgtg
ctcgaggacggcgtcctggtcgagcactacgtcgcccgggccacctcgggcaccatggtc
ggcaacgtgtacctcggcaaggtgcagaacgtgctgcccagcatggaggcggcgttcgtc
gacgtcggccggggccgcaacgcggtgctgtacgccggcgaggtgaactgggacgccacc
gggctggagggtcgggcccgctcgatcgagcaggcgctgcgctccggtgactcggtgctg
gttcaggtcaccaaggatccgatcggtcacaagggcgcccggctgaccagccacatcgcg
ctctccggccggcacctggtctacgtgcccaacggcaacgcctccgggatcagccgcaag
ttgccggacaacgagcgcaagcggctccgggacatcctgaagaagctggtgccggacggc
gcgggcgtgatcgtgcggaccgcggccgagggcgccagcgaggacgagttggcccgcgac
gtcaagcggctgcaggcgcagtgggaggacatccaggcgcgggccgccgagggcaacgcc
ccgcgcgccctctccgaggagcccgacctggtcatccgggtggtccgggacctgttcaac
gaggacttccgcgagctcatcgtgcagggcgagcaggcgtacgccgaggtggagaactac
ctccactcggtctcgccggacctggtcgagcggctgcaccggcacgtcggcgtgggtgac
gtgttcgccgagaaccggatcgacgagcagatcctcaagggcctggaccgcaaggtgttc
ctgccctccggcggccacctggtgatcgaccgcaccgaggcgatgaccgtggtcgacgtc
aacaccggcaagtacaccggtgcgggcggcaacctggaggagacggtcacccgcaacaac
ctggaggcggccgaggagatcgtgcgtcagctgcggctgcgcgacctcggtggcatcgtg
gtgatcgacttcatcgacatggtgctggagagcaaccgcgagctggtgctgcgccggctg
accgagtgcctgggccgggaccggaccaagcaccaggttaccgagatcacctcgctgggc
ctggtgcagatgacccgcaagcggatcggcgccgggctgctggaggcgttcagcgagacc
tgtgaccactgcaagggccggggcgtgatcatccatcacgagccggtgcccgagaggcgg
tccaacggcggtggcgccgcgccggccgcgacccaggtgaaggcggtggccgcggcggcc
cggaccgaggctccgccggcacagccggcggcggccacgagcgggcggtcgcggcggcgg
cgcggcggcggggacaccccgccggtcgaggtggccgaggtcgtggagccgatcaccgag
caggccggtccgatcacggaggaggccggtccggccgccgaggtggccgagctgccggcg
atccccgaggtgcccgggacgccggtcgccccggtggccgccgcggcgccggtggccggt
tccggggtgatccggtccggcgtggtgcggcccgcgcagccggtggtgacctcgtcggcc
gacgcggacgactacgacatcagcggctacgacctgtcccggtacgagaccgaggaggcc
gacggggcggcgtacgaggcggacaccgagccgctgcgcctggtcggctcggacgacccg
gacgcggccgacgaggacgaggacgacgacgagtcggtgggggtcggaaccggccgccgc
cggtcccgccgcagtggcgcccgccggcggacccgtccctga
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