Actinoplanes sp. SE50/110: ACPL_5325
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Entry
ACPL_5325 CDS
T02044
Symbol
sigH
Name
(GenBank) RNA polymerase sigma factor rpoD
KO
K03090
RNA polymerase sigma-B factor
Organism
ase
Actinoplanes sp. SE50/110
Brite
KEGG Orthology (KO) [BR:
ase00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ase03021
]
ACPL_5325 (sigH)
Transcription machinery [BR:
ase03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ACPL_5325 (sigH)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
Sigma70_r4_2
HTH_10
HTH_Crp_2
HTH_23
GerE
MarR
DUF134
DUF7343
HTH_3
MarR_2
HTH_24
DUF722
HTH_Tnp_4
Sigma70_ECF
HTH_CodY
Motif
Other DBs
NCBI-ProteinID:
AEV86212
LinkDB
All DBs
Position
complement(5812059..5812868)
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AA seq
269 aa
AA seq
DB search
MTTAPLHIHRSAGTASADPAPEATATELLDAMAVLPVGQRRCRVRDRAIEAWLPLARHLA
NRYAGRGEPTDDLIQTATVGLIKAVDKFDPERGVDFAGYAIPTIIGEIKRHFRDRTWSVR
VPRRLQELRLAITEANSTLTHALGRSPTVPDIAVHLGISEEDVLEGLEGARAYNATSLST
PINADGTTELGDTLGAEDHEYELAETRVALGPALALLDEREQRILTLRFYGNLTQSQIAD
QIGISQMHVSRLLTKALAKLRTQLAAETL
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atgacaacagctccgcttcatattcatcgatccgctgggaccgcctccgccgacccggcg
cccgaggccaccgccaccgagctgctcgacgcgatggccgtgctgccggtcggccagcga
cgctgccgggtccgtgaccgggcgatcgaggcctggctgccgctggcccgccacctggcc
aaccgctacgccggccgcggcgaaccgaccgacgacctgatccagaccgccaccgtcggc
ctgatcaaggccgtcgacaaattcgacccggagcgcggcgtcgacttcgccggctacgcc
atccccaccatcatcggggagatcaagcgccacttccgcgaccgcacctggtcggtccgc
gtcccgcgccggctgcaggagctccgcctcgccatcaccgaggccaacagcacgctcacc
cacgcgctgggccgctcgccgaccgtcccggacatcgcggtgcacctcggcatcagcgag
gaggacgtgctggagggcctggagggcgcccgcgcctacaacgccacctcgctgtccacc
ccgatcaacgcggacggcaccaccgagctgggcgacacgctgggcgccgaggaccacgag
tacgagctggccgagacccgggtggcgctcgggccggcgctggccctgctggacgagcgc
gagcagcggatcctgacgctgcgcttctacggcaacctgacccagtcgcagatcgccgac
cagatcggcatctcccagatgcacgtctcccgcctgctcaccaaggcgctggcgaaactg
cgcacccagctggccgccgagacgctgtag
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