Actinoplanes sp. SE50/110: ACPL_5762
Help
Entry
ACPL_5762 CDS
T02044
Symbol
deaD
Name
(GenBank) Cold-shock DEAD box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ase
Actinoplanes sp. SE50/110
Pathway
ase03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ase00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACPL_5762 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ase03019
]
ACPL_5762 (deaD)
03009 Ribosome biogenesis [BR:
ase03009
]
ACPL_5762 (deaD)
Enzymes [BR:
ase01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ACPL_5762 (deaD)
Messenger RNA biogenesis [BR:
ase03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ACPL_5762 (deaD)
Ribosome biogenesis [BR:
ase03009
]
Prokaryotic type
rRNA helicases
ACPL_5762 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
WSD
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AEV86649
UniProt:
G8SDN4
LinkDB
All DBs
Position
6304514..6306223
Genome browser
AA seq
569 aa
AA seq
DB search
MDEDLANSTDGGFAGLGLRPELLRALTDLGYEEPTPIQREAITPLVAGHDLVGQAATGTG
KTAAFALPLLQSLTPGSADTPTALVLVPTRELAEQVSQAVHRYGRDLNVRVLPVYGGQPI
SRQLQVLRRGVDVVVGTPGRVLDHIERETLRLDAIRTVVLDEADEMLDMGFAEDIEAILA
ETPAERQTVLFSATMPPRIDAIARRHLRDPLRIRMGRDTAAADALPSVRQSTYMVARPHK
AAALGRILDVEMPGAAIVFCRTREEVEEVTESLNGRGYRAEALHGGLSQDQRDRVMSRLR
AGTTELLVATDVAARGLDVDLLTHVINFTVPSAPEAYVHRIGRVGRAGRTGAAITLAEPR
EQRLLKAIERLTGQRIVVEKLPSVTDLRARRLELVRSTVQEAMDADDLDRFRSVLASLTA
DADLETVALAGLRLLHEANGGDVDEPEIPSLSPGRDPDRRPRDTDRSRDSDRHPRDDRYT
DRRSARNRGSFTQIFVGLGRRAGLRPQDLVGAIAGEAGLPARDVGSIQITDRFALVEVPE
TDADRVIRALSHSTIRGRRPTVRRDRPHR
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atggacgaagacctcgcgaacagcaccgacggaggcttcgccggcctgggactgcgcccc
gagctgctgcgtgcgctcaccgacctcggctatgaggagcccaccccgattcagcgggag
gcgatcaccccgctggtcgccggccacgacctggtcggccaggccgcgaccggtaccggc
aagaccgccgctttcgctctgccgctgctgcagagcctcacccccggttcggccgacact
cccaccgcgctggtcctggtccccacccgggagctggccgagcaggtctcccaggcggtg
caccggtacggccgtgatctgaacgtgcgggtgctgccggtctacggcggccagccgatc
agccgccagctgcaggtgttgcgccgcggcgtcgacgtggtcgtcggcaccccgggccgc
gtcctcgaccacatcgagcgggagacgctgcggctcgacgcgatccgcaccgtcgtcctg
gacgaggccgacgagatgctcgacatgggtttcgccgaggacatcgaggccattctggcc
gagaccccggcggagcggcagaccgtcctgttctccgccacgatgccgccgcgcatcgac
gccatcgcccgccggcacctgcgtgacccgctgcgcatccggatgggccgcgacaccgcg
gccgccgacgcgctgccctcggtccgccagagcacgtacatggtcgcccgcccgcacaag
gccgccgccctgggccgcattctggacgtcgagatgccgggcgccgccatcgtcttctgc
cgcacccgcgaggaggtggaggaggtcaccgagtcgctgaacggccggggctaccgcgcg
gaagccctgcacggcggcctcagccaggatcagcgtgaccgggtgatgagccgcctgcgg
gccggcaccaccgagctgctggtcgccaccgacgtcgccgcccggggcttggacgtcgac
ctgctcacccacgtcatcaacttcacggtgccgtcggcccccgaggcgtacgtccaccgc
atcggccgcgtcggccgggccggccgcaccggcgccgccatcaccctggccgagccgcgc
gagcagcgcctcctgaaagccatcgagcgtctgacgggccagcgcatcgtcgtcgagaag
ctcccctcggtgacggacctgcgggcccgccgcctggaactggtccgctccaccgtccag
gaggccatggacgccgacgacctggaccgtttccgctcggttctggcctcgctcaccgcg
gacgccgacctggagacggtcgccctggccggcctcagactgctccacgaggccaacggc
ggcgacgtcgacgagccggagatcccgtcgctgtccccgggccgcgatccggaccgccgc
ccccgcgacacggaccgctcccgcgactccgaccgccacccccgcgacgaccgctacacc
gaccgccgttccgcccgcaaccgcggctccttcacccagatcttcgtcggcctcggccgc
cgggccggcctacgcccccaggacctggtcggcgccatcgccggcgaggccggcctcccg
gcccgcgacgtcggctccatccagatcaccgaccgtttcgccctggtcgaggtccccgaa
accgacgccgaccgcgtcatccgagccctctcccacagcaccatccgaggccgccgcccg
accgtccgccgagaccgcccccaccgctga
DBGET
integrated database retrieval system
